Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGATTTGGCTATCAGAACCAGAGGTTTCCCTCTCAGgtacgtgatttgtagaacttttgattgtcttcatttgctaagtagccatgtagacactaggtgacaactgacaagcatatgcttggtgcag

Basic information

species Zea mays
transcript GRMZM2G588223_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G588223_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g42600.1 (Oryza sativa), 5'ss of exon 8
-------------------------------------------------------------GATAGATTTGGCTATCAGAACCAGAGGTTTCCCTCTCAGgtacgtgatttgtagaacttttg-attgtcttcatttgctaagtagccatgtagacactaggtgacaactgacaagcatatgcttggtgcag
                                                             ||||||||| | |||||||||||||||| |||||| |||||| | ||||     |||||||| | | ||| || ||||||   || ||| |  | || |      |||    || ||| | ||||   |||
CTATGATAAAAAGCAACTACCTCACCCATTCTTTCATGGTGGGGAAAACCCTATATCCTCTGATAGATTTAGTTATCAGAACCAGAGGTATCCCTCCCAGgtaggcgattc----aacttttgtagtctctgcaattgctatcaagacatttctataccactctgtaac----aaacattttcttgactcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31359957|gb|CD444314.1|CD444314
EST:     GATAGATTTGGCTATCAGAACCAGAGGTTTCCCTCTCAG                         CTACCGCACACCGAGGATCACCACATGCTTCAGAACCATGCACCTCCAAAA
genomic: GATAGATTTGGCTATCAGAACCAGAGGTTTCCCTCTCAGgtacgtgatt ... cttggtgcagCTACCGCACACCGAGGATCACCACATGCTTCAGAACCATGCACCTCCAAAA