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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGAAGGCGCACGAGATCTCCGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccctctcggctccgctgcttacgtttcggcacggttccgctgcatgctgcaccatttaatttcgaagctgtttgaagctatggattacggtgc...

Basic information

species Zea mays
transcript GRMZM2G553379_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71316728|gb|DR795038.1|DR795038
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|78089929|gb|DV518303.1|DV518303
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|18659149|gb|BM500180.1|BM500180
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|76913834|gb|DV165273.1|DV165273
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|101396806|gb|EB820329.1|EB820329
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACCAATATTCCACCGATTCATG                         TATGGACAAAATTC
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTC
EST: gi|74232113|gb|DT640027.1|DT640027
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|50323594|gb|CO518720.1|CO518720
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|211020972|gb|FL097346.1|FL097346
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|76011626|gb|DT938796.1|DT938796
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|76292653|gb|DV032221.1|DV032221
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|91868416|gb|EB400027.1|EB400027
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|26559940|gb|CA832175.1|CA832175
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|9742855|gb|BE519003.1|BE519003
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|67016868|gb|CO445617.1|CO445617
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|148980413|gb|EE027124.2|EE027124
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|87157251|gb|DY402040.1|DY402040
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|71306906|gb|DR789609.1|DR789609
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|211020973|gb|FL097347.1|FL097347
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATT
EST: gi|76909292|gb|DV163313.1|DV163313
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|78082314|gb|DV510726.1|DV510726
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|76020109|gb|DT947279.1|DT947279
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|74238831|gb|DT646745.1|DT646745
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGC
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGC
EST: gi|71325989|gb|DR799677.1|DR799677
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|71440937|gb|DR821987.1|DR821987
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|149001052|gb|EE038303.2|EE038303
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|76932876|gb|DV173214.1|DV173214
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAANAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|149079785|gb|EE168784.2|EE168784
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAANAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|50325812|gb|CO520938.1|CO520938
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|149083438|gb|EE172758.2|EE172758
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|74242354|gb|DT650268.1|DT650268
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|26559563|gb|CA831798.1|CA831798
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|50329667|gb|CO524793.1|CO524793
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGC
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGC
EST: gi|50325934|gb|CO521060.1|CO521060
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|71425445|gb|DR806675.1|DR806675
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|78088356|gb|DV516749.1|DV516749
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|149008923|gb|EE041143.2|EE041143
EST:     ATCATCTTCTCCCCCAAAGGGAAGCTCTACGAATATTCCACCGATTCATG                         GATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|50324244|gb|CO519370.1|CO519370
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|78081870|gb|DV510282.1|DV510282
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|89757241|gb|DY686923.1|DY686923
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|37424942|gb|CF650205.1|CF650205
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|74244253|gb|DT652167.1|DT652167
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT