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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACAATGTGGATGGCGGAGACGATCTTGATCTTATTGTTACTACTATGAACGGCAACGTCTTTAGCTTTTCCACTCCCTCACCACACCATCCACTCAAGgtaggcaatgcgtttttgtagtcatgtcttcattttgtttcacagtatttaaacttaagtcggatagatcttttggtgaacccattgcaacttctgctta...

Basic information

species Zea mays
transcript GRMZM2G521085_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G521085_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g61050.1 (Oryza sativa), 5'ss of exon 11
TGACAATGTGGATGGCGGAGACGATCTTGATCTTATTGTTACTACTATGAACGGCAACGTCTTTAGCTTTTCCACTCCCTCACCACACCATCCACTCAAGgtaggcaatgcgtttttgtagtcatgtcttcattttgtttcacagtatttaaacttaagtcggatagatct---tttggtgaacccattgcaacttctgctta-
||| ||||| ||||| ||||| || || ||||||||||||||||| ||||| ||||| |||||  |||| ||||||||||| || ||||||||||| ||||||   |    ||||||    | |||||   | |||     | | ||   |||   |       |   ||    ||     || |||  | |  ||  ||    
TGATAATGTTGATGGTGGAGATGACCTCGATCTTATTGTTACTACCATGAATGGCAATGTCTTCTGCTTCTCCACTCCCTCTCCGCACCATCCACTTAAGgtacatagcatgttttt----ttatgtcaataatttagagtaaattacacaaaaccataggtattgtgtccaagttacacaaaaccacaggagttttggcacgt

upper sequence: GRMZM2G521085_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 11
TGACAATGTGGATGGCGGAGACGATCTTGATCTTATTGTTACTACTATGAACGGCAACGTCTTTAGCTTTTCCACTCCCTCACCACACCATCCACTCAAGgtaggc--aatgcgtttttgtagtc-atgtcttcattt-tgtttcacagtatttaaacttaagtcggatagatcttttggtgaacccattgcaacttctgctta
 |||||||| ||||| ||||| |||||||||||||||||||| || ||||| ||||| || ||| ||||||| |||||  | ||||| ||||| ||||||| |||    |  |     || | |  || | ||  | | |   |   | |   ||   ||  |    ||| |  |||     | |  |||  |   | | |   
GGACAATGTTGATGGTGGAGATGATCTTGATCTTATTGTTACAACCATGAATGGCAATGTATTTTGCTTTTCAACTCCTGCTCCACATCATCCCCTCAAGgcaggatagacccaaaactgaattttatttttttgtgtataaattttatttcataggtttgtgattcataaaggtttctaatatcatattttacacttttccag