Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCTCGTCTTCGAGTTCCTCGACACCGATCTCAAGAAGTACCTCGACGTCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaaccacgcttacgtgcttcttctcactcggagagtagctattagtcacctgccctgcccagttcacctctatcgtctgtcaaaatgatacatttc...

Basic information

species Zea mays
transcript GRMZM2G495626_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G495626_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g67160.1 (Oryza sativa), 5'ss of exon 1
CTACCTCGTCTTCGAGTTCCTCGACACCGATCTCAAGAAGTACCTCGACGTCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaaccacgcttacgtgcttcttctcactcggagagtagctattagtcacct--gccctgcccagtt-cacctctatcgtctgtcaaaatgatacatttc
|||||||||||||||||||||||||||||| |||||||||| | |||||| |||||||| ||| |||| | |  | || |||||| | |   ||||||||||||    |  || |   |    | | ||  ||   |  |     || ||  |||  |       | ||| || |      ||  || |||||||   |    
CTACCTCGTCTTCGAGTTCCTCGACACCGACCTCAAGAAGTTCGTCGACGCCTACCGCAAGGGCCCCAACCCTCGCCCCCTCCCCACCAACGTCATCAAGgtacacctcttgcctgattatcccgtgtc-ttctccgcttctgggttggttgcctaggtgaaaatcggttgcagcaaccatgttagtgaaaatgaatgaaa--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101462|gb|EE187582.2|EE187582
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|74238747|gb|DT646661.1|DT646661
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|101398284|gb|EB821015.1|EB821015
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|71450237|gb|DR831287.1|DR831287
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|211530153|gb|FL280582.1|FL280582
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|28568987|gb|CB280862.1|CB280862
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|71771339|gb|DR969276.1|DR969276
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|32809898|gb|CD962132.1|CD962132
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|91055879|gb|EB166297.1|EB166297
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|87157025|gb|DY401814.1|DY401814
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|31612143|gb|CD568765.1|CD568765
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|91868821|gb|EB400169.1|EB400169
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|149085475|gb|EE174981.2|EE174981
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|76289583|gb|DV029151.1|DV029151
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|211533158|gb|FL280597.1|FL280597
EST:     TCTACCGCAGGG--CCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATTGCAAAGGAGTT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTAT-GCAAAGGAGTT
EST: gi|91872387|gb|EB402344.1|EB402344
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|32800197|gb|CD952433.1|CD952433
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|148931796|gb|EC877239.2|EC877239
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|88755350|gb|DY539491.1|DY539491
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|22542240|gb|BU092678.1|BU092678
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|211530160|gb|FL280589.1|FL280589
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|78085720|gb|DV514113.1|DV514113
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATACCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|211530156|gb|FL280585.1|FL280585
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATTGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|32810190|gb|CD962424.1|CD962424
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|26559291|gb|CA831526.1|CA831526
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|32791746|gb|CD943982.1|CD943982
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|211362664|gb|FL128442.1|FL128442
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|50336413|gb|CO531539.1|CO531539
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|32799575|gb|CD951811.1|CD951811
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACATTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|32929643|gb|CF034455.1|CF034455
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|211533159|gb|FL280598.1|FL280598
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAG
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAG
EST: gi|94473282|gb|EB702240.1|EB702240
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|32928347|gb|CF033159.1|CF033159
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|91878648|gb|EB408605.1|EB408605
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTTGCCCACTGCCATAGCCATGG
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTT-GCACACTGCCATAGCCATGG
EST: gi|50328766|gb|CO523892.1|CO523892
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCAT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCAT
EST: gi|149110996|gb|EE294495.2|EE294495
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|76294289|gb|DV033857.1|DV033857
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|71313277|gb|DR793172.1|DR793172
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|71431609|gb|DR812659.1|DR812659
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
EST: gi|32807068|gb|CD959302.1|CD959302
EST:     TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAG                         AATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT
genomic: TCTACCGCAGGGGGCCCAGCGCCAGGCCGCTCCCCGCGACACTCATCAAGgtactaacca ... ttctttctagAATTTCCTGTATCAGTTATGCAAAGGAGTTGCACACTGCCATAGCCATGGT