1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGACAGAGGAGAGGAGACACAGGCGACACGCGCCATTTGGGAGAGGGAAAGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACCgtgaggcctcctcctcctccttgctggcgagattgcatgcctgacgcgcagcgcacggtcgtgttcgttctcagttttctcgcaccgccccaatttaacaattttgattgtggggtcctgcttgtgcttgcggctattgcag
species | Zea mays |
transcript | GRMZM2G488458_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACC GGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGAEST: gi|91877683|gb|EB407640.1|EB407640
genomic: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACCgtgaggcctc ... gctattgcagGGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGA
EST: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACC GGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGAEST: gi|211402516|gb|FL246548.1|FL246548
genomic: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACCgtgaggcctc ... gctattgcagGGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGA
EST: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACC GGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGAEST: gi|211399980|gb|FL246545.1|FL246545
genomic: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACCgtgaggcctc ... gctattgcagGGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGA
EST: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACC GGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGAEST: gi|211399982|gb|FL246547.1|FL246547
genomic: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACCgtgaggcctc ... gctattgcagGGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGA
EST: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACC GGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGAEST: gi|211402517|gb|FL246549.1|FL246549
genomic: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACCgtgaggcctc ... gctattgcagGGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGA
EST: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACC GGCCGGTCGCTCGTGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGAEST: gi|26558346|gb|CA830581.1|CA830581
genomic: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACCgtgaggcctc ... gctattgcagGGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGA
EST: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACC GGCCGGACGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGAEST: gi|22546220|gb|BU098516.1|BU098516
genomic: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACCgtgaggcctc ... gctattgcagGGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGA
EST: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACC GGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGAEST: gi|87155227|gb|DY400016.1|DY400016
genomic: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACCgtgaggcctc ... gctattgcagGGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGA
EST: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACC GGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGA
genomic: AGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACCgtgaggcctc ... gctattgcagGGCCGGTCGCTCGAGCTCTTTGCAGGACGGCGTACCCGGGTGCAAGGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGACAGAGGAGAGGAGACACAGGCGACACGCGCCATTTGGGAGAGGGAAAGGAATGGAGCTGACGTCTTCTTCCCGCTCCGTGCTCTCCTCCTGCAACCgtgaggcctcctcctcctccttgctggcgagattgcatgcctgacgcgcagcgcacggtcgtgttcgttctcagttttctcgcaccgccccaatttaacaattttgattgtggggtcctgcttgtgcttgcggctattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC