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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTCAATCACCGCTCTCCGGGAGCTTCCGAGGGCCGTCGGATGGAGCCGTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAGgtacgcgtgccgcccggcccgacctccttcgcgcaattggggtctcgccgcttccgtgggggtttcgccgcttcgcttttgcccgctcactcgctagggttttagatctcccatgcgactgcttggtccccgcgcttgctaaccgtagttttggcgtggatgctttcgcag

Basic information

species Zea mays
transcript GRMZM2G475017_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78116119|gb|DV534507.1|DV534507
EST:     GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAG                         AGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
genomic: GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAGgtacgcgtgc ... gctttcgcagAGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
EST: gi|91876225|gb|EB406182.1|EB406182
EST:     GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAG                         AGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
genomic: GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAGgtacgcgtgc ... gctttcgcagAGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
EST: gi|94474028|gb|EB702986.1|EB702986
EST:     GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAG                         AGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
genomic: GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAGgtacgcgtgc ... gctttcgcagAGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
EST: gi|76921023|gb|DV168420.1|DV168420
EST:     GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAG                         AGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
genomic: GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAGgtacgcgtgc ... gctttcgcagAGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
EST: gi|71775279|gb|DR973157.1|DR973157
EST:     GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAG                         AGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
genomic: GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAGgtacgcgtgc ... gctttcgcagAGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
EST: gi|38687417|gb|CK144448.1|CK144448
EST:     GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAG                         AGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
genomic: GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAGgtacgcgtgc ... gctttcgcagAGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
EST: gi|76289471|gb|DV029039.1|DV029039
EST:     GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAG                         AGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
genomic: GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAGgtacgcgtgc ... gctttcgcagAGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
EST: gi|37425824|gb|CF650661.1|CF650661
EST:     GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAG                         AGTCGATGCGGAAGCTGGGGCTCGGCGAGGACTACAAAGCGGGGGAGGAGA
genomic: GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAGgtacgcgtgc ... gctttcgcagAGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
EST: gi|50338849|gb|CO533975.1|CO533975
EST:     GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAG                         AGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA
genomic: GTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAGgtacgcgtgc ... gctttcgcagAGTCGATGCGGAAGCTGGGGCTCGGCGAGGACGACGAAGCGGGGGAGGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCTCAATCACCGCTCTCCGGGAGCTTCCGAGGGCCGTCGGATGGAGCCGTACGCGGCGACGAAGGGCGGCGAGTCCGACGCCGGCACCGGCCTGGAAGgtacgcgtgccgcccggcccgacctccttcgcgcaattggggtctcgccgcttccgtgggggtttcgccgcttcgcttttgcccgctcactcgctagggttttagatctcccatgcgactgcttggtccccgcgcttgctaaccgtagttttggcgtggatgctttcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG