Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGTTTAGGGCAAGTACTTCAGCTGATTCTATGACCAAGCATCAATCACGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcattttcatacttgggttaatcttgtcacttgtgtgccagtgttcacgtagatgtgtaaaaatggtctacctgaatgaaagttccatagagaaatgacaatgttaacttattgttgtttcag

Basic information

species Zea mays
transcript GRMZM2G472770_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G472770_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g55010.1 (Oryza sativa), 5'ss of exon 3
AAGAGTTTAGGGCAAGTACTTCAGCTGATTCTATGACCAAGCATCAATCACGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcattttcatacttgggt---taatcttgtcacttgtgtgccagtgttcacgtagatgtgtaa------aaatggtctac--ctgaatgaaagttccatagagaaatg-acaatgttaacttattgt-tgtttcag------------------
| ||||| |||||||||||||||||||||||| | ||||||||||| || |||||||| |||||| ||||||||||  |||| ||||||||||| |||||||||||| ||| | | ||| | ||   ||||  | ||||    | | ||   || |  ||||| | ||       ||||| | |||  | ||   |||  ||  ||  | ||    || |   || ||||    ||| | |                   
AGGAGTTCAGGGCAAGTACTTCAGCTGATTCTGTCACCAAGCATCAGTCGCGTTATGTCTTGCAAATAATAAAATATCTAACGAACCATCCTGATAACAGgtgagtgtattctgaaactcgagtaactaattctttcacaaagg-gtcaccatttatttagatatatactgtcataaatgttgtacaacagagaaaaaaatctctactggaacatgcattaggaaattatgaaatgtctaactttccaatatttattcag

upper sequence: GRMZM2G472770_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g07470.1 (Oryza sativa), 5'ss of exon 3
AAGAGTTTAGGGCAAGTACTTCAGCTGATTCTATGACCAAGCATCAATCACGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcattttcatacttgggt--taatcttgtcacttgtgtgccagtgttcacgtagat---gtgtaaaaatggtctacctgaatgaaagttccatag-agaaatgacaatgttaacttattgttgtttcag-------------------------
|||| | ||| ||||||||||||||||||| | | ||||| ||||| ||||||||||| |||||  |||||||||| || |||| |||||| || |||||||||||| |||||   ||||| ||   ||  |   | |    ||   ||||||||| |||||   |    |||||  | |||||||| |||||||   ||  ||||    || | | || | | | |  |    |                         
AAGAATATAGAGCAAGTACTTCAGCTGATTTTGTCACCAAACATCAGTCACGTTATGTCTTGCAGATAATAAAATATGTGACAAGCCATCCAGATAACAGgtgagtgtattttggaacttgagtaacaaattctccgcggaggttgaagtgttcacatagataaagaacgaaaatattatacctgaaagaaagttgtctactagaacatgcattatgaaataaatataataattgtctacttttctgatatgtcattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211349626|gb|FK991789.1|FK991789
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGG
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGG
EST: gi|211352036|gb|FK991805.1|FK991805
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211349624|gb|FK991787.1|FK991787
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211352030|gb|FK991799.1|FK991799
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211354437|gb|FK991814.1|FK991814
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211349625|gb|FK991788.1|FK991788
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211352034|gb|FK991803.1|FK991803
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211349631|gb|FK991794.1|FK991794
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211349629|gb|FK991792.1|FK991792
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211349628|gb|FK991791.1|FK991791
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211354436|gb|FK991813.1|FK991813
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211352032|gb|FK991801.1|FK991801
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211352033|gb|FK991802.1|FK991802
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211352029|gb|FK991798.1|FK991798
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211352037|gb|FK991806.1|FK991806
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGGTGATGCTACAGGGGATTATCCATTTAGTCACCACAA
EST: gi|211352038|gb|FK991807.1|FK991807
EST:     CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAG                         GTGGGTTGGTGTAGG
genomic: CGTTATGTGTTGCAAGTAATAAAATACGTAACAAACCATCCTGACAACAGgtgagtgcat ... gttgtttcagGTGGGTTGGTGTAGG