1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACCAACACGGTATAGTTTCTCTGCCCTCAGAACCCTCGCCGCCGCCCGTCGGAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAGgtaattgcggcggacaccgtttcctccagaaacatgtcctctcctttgcgatagaacaaattacatggtgaaatggtgatgatggtgactgaatcttgttagacactggcgtgagtgatggttgtagtggttgcatttctctctctttcttatattcgtttcatgtacggctcatggtgattacag
species | Zea mays |
transcript | GRMZM2G471805_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAG GTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGEST: gi|211167619|gb|FL375013.1|FL375013
genomic: GAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAGgtaattgcgg ... gtgattacagGTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCG
EST: TCGGAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAG GTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGEST: gi|211178303|gb|FL423187.1|FL423187
genomic: TCGGAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAGgtaattgcgg ... gtgattacagGTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCG
EST: TCGGAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAG GTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGEST: gi|211209107|gb|FL370009.1|FL370009
genomic: TCGGAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAGgtaattgcgg ... gtgattacagGTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCG
EST: TCGGAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAG GTTGAATTCGCCGAACACRTCGGCTATTTCGCTGGAGGTGATGGGCCACCGEST: gi|211219619|gb|FL402178.1|FL402178
genomic: TCGGAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAGgtaattgcgg ... gtgattacagGTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCG
EST: TCGGAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAG GTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGEST: gi|211442064|gb|FL421101.1|FL421101
genomic: TCGGAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAGgtaattgcgg ... gtgattacagGTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCG
EST: TCGGAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAG GTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGEST: gi|20301099|gb|BQ164042.1|BQ164042
genomic: TCGGAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAGgtaattgcgg ... gtgattacagGTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCG
EST: GTCAGTTCGCCGTCGAAGGATATGGACTATGACAG GTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCG
genomic: GTCAGTTCGCCGTCGAAGGATATGGACTATGACAGgtaattgcgg ... gtgattacagGTTGAATTCGCCGAACACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCAACACGGTATAGTTTCTCTGCCCTCAGAACCCTCGCCGCCGCCCGTCGGAGCTCCGGTGTGTCAGTTCGCCGTCGAAGGATATGGACTATGACAGgtaattgcggcggacaccgtttcctccagaaacatgtcctctcctttgcgatagaacaaattacatggtgaaatggtgatgatggtgactgaatcttgttagacactggcgtgagtgatggttgtagtggttgcatttctctctctttcttatattcgtttcatgtacggctcatggtgattacag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT