1 5' 3' | 2 5' 3' | 3 5' 3' |
GTATCAGGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttcttgactcttgccctctgttatgttcctcccctctctgtctgtccctggcaaaacgggcttatgcttcttcttcttcttcttcttctttttgttcgctgctgtcag
species | Zea mays |
transcript | GRMZM2G470499_T06 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|71309564|gb|DR791060.1|DR791060
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGGEST: gi|50332848|gb|CO527974.1|CO527974
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
EST: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACT GTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
genomic: GAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttctt ... ctgctgtcagGTTATCCAAAGATCATCCATCGTGACATCAAAGCGGCGAACATCCTTCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATCAGGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCGCGGTTGGCTCCGCGAAGGGCCTCGCGTACCTGCACGAAGACTgtgagttcttgactcttgccctctgttatgttcctcccctctctgtctgtccctggcaaaacgggcttatgcttcttcttcttcttcttcttctttttgttcgctgctgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA