Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAACCTCGTCTCCCTCGTCGGCTACTGCCTCTACGGCGAGCAGCGGCTGCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgcacggacggacgctggagctccttaactgcgagtgggtctgtctgacactggagctcggtatcag

Basic information

species Zea mays
transcript GRMZM2G470499_T05
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G470499_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g54700.1 (Oryza sativa), 5'ss of exon 2
AAGAACCTCGTCTCCCTCGTCGGCTACTGCCTCTACGGCGAGCAGCGGCTGCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgcacggacggacgctgga-----gctcctta----actgcgagtgggtctgtctgacactggagctcggtatcag---
|||||||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||||| || ||||||| | ||   | | |||| | || |     | | | |      ||| |  | | |  | |||||||  | | | ||| || |   
AAGAACCTCGTCTCCCTCGTCGGCTACTGCATCTACGGCGAGCAGCGCCTTCTCGTCTACGAGTACGTCCCCAACAAGACGCTCGAGTTCCACCTGCACGgtaagtacttgctgccggatgatgtaccattgttgcgtgtaatgctggggcttgcttgggctgacacgagtggttggtttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78090030|gb|DV518404.1|DV518404
EST:     CTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: CTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAG-TTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|101401541|gb|EB822450.1|EB822450
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71315889|gb|DR794631.1|DR794631
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71430040|gb|DR811090.1|DR811090
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|149012054|gb|EE042472.2|EE042472
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|148972877|gb|EE023879.2|EE023879
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
EST: gi|71303565|gb|DR787892.1|DR787892
EST:     GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACG                         GGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG
genomic: GCTCGTGTACGAGTACGTGCCCAACAAGACCCTCGAGTTCCATCTCCACGgtatgcacgc ... tcggtatcagGGACAGGGAGTGGCAGGCCGACGCTGGACTGGCCGAGGCGGTGGAGGATCG