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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCTCATGGAACTCGAATTCGATGACCGCTTCCGCCGCTGGCACTCCTGCGACCCCGCCGAACTTTTCCACGCCCCAGTCCGCAAGTCCGTGCCCCAGgtacactgctcgttctcgccgttccgcacgagaattacgccgaacagacggtgggcgcgtctctgagccctgcgtatgacagttcgggtttgattggttg...

Basic information

species Zea mays
transcript GRMZM2G470438_T06
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G470438_T06 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g06900.1 (Oryza sativa), 5'ss of exon 1
CCACCTCATGGAACTCGAATTCGATGACCGCTTCCGCCGCTGGCACTCCTGCGACCCCGCCGAACTTTTCCACGCCCCAGTCCGCAAGTCCGTGCCCCAGgtacactgctcgttctcgccgttccgcacgagaattacgccgaacagacggtgggcgcgtctctgagccctgcgtatgacagt-tcgggtttgattggttg------
 ||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||||| || || ||||||||||| || ||||||||||| ||||||||||    |||  | || | | | | ||      || | ||||||||  |||| ||    | | | | |||| | ||       ||     | |   || |      
GCACCTCATGGAGCTCGAGTTCGACGACCGGTTCCGCCGCTGGCACTCGTGCGACCCCGCTGATCTCTTCCACGCCCCCGTTCGCAAGTCCGTACCCCAGgtacggctctctgtttc-ctgctaccca------tttctccgaacagttggtgcgcaacgcgcggtgtcctgtgaattgtgccctcaccagtcacgtgtcgtttttt

upper sequence: GRMZM2G470438_T06 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G16200.1 (Glycine max), 5'ss of exon 1
CCACCTCATGGAACTCGAATTCGATGACCGCTTCCGCCGCTGGCACTCCTGCGACCCCGCCGAACTTTTCCACGCCCCAGTCCGCAAGTCCGTGCCCCAGgtacactgctcgttctcgccgttccgcacgagaattacgccgaacagacggtgggcgcg---tctctgagccctgcgtatgacagttcgggttt-gattggttg
|||||||||||||||||||||||| ||||| | ||||   ||||||||||| ||||||||||| || |||| ||| || || |  || | ||| ||| |||| | || | |     |||   ||| | | |    |             | |          | ||| |    |   |      ||| | |||| || |  | |
CCACCTCATGGAACTCGAATTCGACGACCGTTACCGCAAGTGGCACTCCTGTGACCCCGCCGATCTCTTCCGCGCTCCCGTTCATAAATTCGTCCCCGAGgtccgcttc-caagagcgctactcctctctatccctgtcgtctctgtgtgtttaattttaattttcttaattgtaatttgatttgtttgcgttttgaatcctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74232228|gb|DT640142.1|DT640142
EST:     GCGACCCCGCCGAACTTTTCCACGCCCCAGTCCGCAAGTCCGTGCCCCAG                         GACAAGCAGGCCATAAAACAAACTTTGGAAGAAGAAGCTAGGAGATGCCAG
genomic: GCGACCCCGCCGAACTTTTCCACGCCCCAGTCCGCAAGTCCGTGCCCCAGgtacactgct ... atatatgcagGACAAGCAGGCCATAAAACAAACTTTGGAAGAAGAAGCTAGGAGATGCCAG