1 5' 3' | 2 5' 3' | 3 5' 3' |
AGGCTATTGTTTTTACAGGTCCGAGATTACATCCATGTGGTTGACCTTGCTGACGGACATATTGCTGCATTGCAGAAGCTTTTTGAGAACTCTAGCATAGgttaacacttgacatcaaccgatccttgaatttctttccatcatttcacgtgtactttttttaaaaactagaccaacctaggatgaactaggtggcatta...
species | Zea mays |
transcript | GRMZM2G469523_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGACGGACATATTGCTGCATTGCAGAAGCTTTTTGAGAACTCTAGCATAG GGTGTGAAGCGTACAACCTTGGAACCGGAAGAGGTACATCTGTGCTGGAGAEST: gi|71425858|gb|DR806940.1|DR806940
genomic: TGACGGACATATTGCTGCATTGCAGAAGCTTTTTGAGAACTCTAGCATAGgttaacactt ... ctatttgcagGGTGTGAAGCGTACAACCTTGGAACCGGAAGAGGTACATCTGTGCTGGAGA
EST: GACGGACATATTGCTGCA-TGCCAGAAGCTTTTTGAGAACTCTAGCATAG GGTGTGAAGCGTACAACCTTGGAACCGGAAGAGGTACATCTGTGCTGGAGAEST: gi|24773701|gb|CA408955.1|CA408955
genomic: GACGGACATATTGCTGCATTG-CAGAAGCTTTTTGAGAACTCTAGCATAGgttaacactt ... ctatttgcagGGTGTGAAGCGTACAACCTTGGAACCGGAAGAGGTACATCTGTGCTGGAGA
EST: GAGAACTCTAGCATAG GGTGTGAAGCGTACAACCTTGGAACCGGAAGAGGTACATCTGTGCTGGAGAEST: gi|33468176|gb|CF245225.1|CF245225
genomic: GAGAACTCTAGCATAGgttaacactt ... ctatttgcagGGTGTGAAGCGTACAACCTTGGAACCGGAAGAGGTACATCTGTGCTGGAGA
EST: GACGGACATATTGCTGCATTGCAGAAGCTTTTTGAGAACTCTAGCATAG GGTGTGAAGCGTACAACCTTGGAACCGGAAGAGGTACATCTGTGCTGGAGAEST: gi|74245905|gb|DT653819.1|DT653819
genomic: GACGGACATATTGCTGCATTGCAGAAGCTTTTTGAGAACTCTAGCATAGgttaacactt ... ctatttgcagGGTGTGAAGCGTACAACCTTGGAACCGGAAGAGGTACATCTGTGCTGGAGA
EST: TGACGGACATATTGCTGCATTGCAGAAGCTTTTTGAGAACTCTAGCATAG GGTGTGAAGCGTACAACCTTGGAACCGGAAGAGGTACATCTGTGCTGGAGA
genomic: TGACGGACATATTGCTGCATTGCAGAAGCTTTTTGAGAACTCTAGCATAGgttaacactt ... ctatttgcagGGTGTGAAGCGTACAACCTTGGAACCGGAAGAGGTACATCTGTGCTGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCTATTGTTTTTACAGGTCCGAGATTACATCCATGTGGTTGACCTTGCTGACGGACATATTGCTGCATTGCAGAAGCTTTTTGAGAACTCTAGCATAGgttaacacttgacatcaaccgatccttgaatttctttccatcatttcacgtgtactttttttaaaaactagaccaacctaggatgaactaggtggcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC