1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACAGACCTCTAAAACCTAGCAGAGGCCCGCGCCGCCGCCGCCAACCGCGACGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatcaatcgtttcaagctcctcctctcccttctgcaccttcgtagagctctctcgcttatttcctgtttgtagtatcgaagcgttttcctgtaca...
species | Zea mays |
transcript | GRMZM2G467086_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|149010282|gb|EE042111.2|EE042111
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|22133771|gb|BQ833893.1|BQ833893
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|67015514|gb|CO444263.1|CO444263
genomic: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: AGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|20802773|gb|BQ293823.1|BQ293823
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|71441332|gb|DR822382.1|DR822382
genomic: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|40337158|gb|CK371228.1|CK371228
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|5499042|gb|AI854909.1|AI854909
genomic: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|71434423|gb|DR815473.1|DR815473
genomic: CGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|71447892|gb|DR828942.1|DR828942
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|71322698|gb|DR798027.1|DR798027
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|211520202|gb|FL010171.1|FL010171
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|21088993|gb|BQ401306.1|BQ401306
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: AGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|29130506|gb|CB381210.1|CB381210
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG -GACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|22819557|gb|BU499647.1|BU499647
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG -GACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|67020213|gb|CO448962.1|CO448962
genomic: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: AGAGGGAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|120480859|gb|EH211066.1|EH211066
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|101383868|gb|EB813989.1|EB813989
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|20301485|gb|BQ164428.1|BQ164428
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: AGAGGAAGGAAGCAGGAACGCGATGCCTATGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|148969444|gb|EE020248.2|EE020248
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|5398724|gb|AI812189.1|AI812189
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|28987333|gb|CB351581.1|CB351581
genomic: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|149015123|gb|EE044887.2|EE044887
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|87156128|gb|DY400917.1|DY400917
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|22549184|gb|BU101385.1|BU101385
genomic: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG -GACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|89761969|gb|DY689774.1|DY689774
genomic: GAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|21810013|gb|BQ668331.1|BQ668331
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: AGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAGEST: gi|78119879|gb|DV538263.1|DV538263
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
EST: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
genomic: CGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatca ... ccgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTAGAGCGCAAGGGCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGACCTCTAAAACCTAGCAGAGGCCCGCGCCGCCGCCGCCAACCGCGACGAGGAAGGAAGCAGGAACGCGATGCCGAAGTCGAAGCGCAACCGCCCAGgtgatcatcaatcgtttcaagctcctcctctcccttctgcaccttcgtagagctctctcgcttatttcctgtttgtagtatcgaagcgttttcctgtaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctctctc