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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTCTACCGCAAAGGCTCATCGGGCTTCTCCAGCGCCTCCACGGCTGAGGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAGgtacttaaaaacacgcttctatgctaatccatttagcttccaccccgcctctgagcttggcgacaaaacatccaagacgtatttcaacgggaatgactgc...

Basic information

species Zea mays
transcript GRMZM2G464885_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G464885_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g40020.2 (Oryza sativa), 5'ss of exon 3
TGGTTCTACCGCAAAGGCTCATCGGGCTTCTCCAGCGCCTCCACGGCTGAGGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAGgtacttaaaaacacgcttctatgctaatccatttagcttccaccccgcctctgagcttggcgacaaaacatccaagacgtatttcaacgggaatgactgc-------
|||||| ||||||||||| | || ||||||||| |||||||||| || ||||| |||||||||||||||||||  |  ||  ||||||||||||||||||||||      | | | || | |  | | | | |      | |    |   |  || |     |  | |   |   | || |  |  |    |||||  |        
TGGTTCAACCGCAAAGGCCCCTCCGGCTTCTCCGGCGCCTCCACCGCCGAGGAGGTCACCGCCGGCGTCGACGCTCGGGGCTTGGTCGCCGTCATCACAGgtac----ggatatgatttttttttgaacgactcg--cgcaaagatggtgcgaagttctattatcacagg-caggggcggagctagaacaaaatgaaaggggttcca

upper sequence: GRMZM2G464885_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g40030.4 (Oryza sativa), 5'ss of exon 3
TGGTTCTACCGCAAAGGCTCATCGGGCTTCTCCAGCGCCTCCACGGCTGAGGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAGgtacttaaaaacacgcttctatgctaatccatttagcttccaccccgcctctgagcttggcgacaaaacatccaagacgtatttcaacgggaatgactgc--
   ||| |||| || ||| | || ||||||||| |||||||||| || ||||| ||||||||||||||||||| ||  ||  ||| ||||||| ||||||||||  ||  |  |    | ||| |  | |  |    ||  |    ||     | |||||  | | |  || ||    | | || |   |   || ||||  
AACTTCAACCGAAATGGCCCCTCTGGCTTCTCCGGCGCCTCCACCGCCGAGGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGgtac--aatcattcaac-caatgttgctgccatgccatttaattaagctcgcaaccttggtcagagag-attcagagtgaacttgac--gacctggctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89762078|gb|DY689837.1|DY689837
EST:     GGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAG                         GTGCGTCGAGCGGCATCGGGCTGGAGACGGCGCGTGTCCTGGCGTTGCGCG
genomic: GGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAGgtacttaaaa ... cgcagcgcagGTGCGTCGAGCGGCATCGGGCTGGAGACGGCGCGTGTCCTGGCGTTGCGCG
EST: gi|71448014|gb|DR829064.1|DR829064
EST:     GGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAG                         GTGCGTCGAGCGGCATCGGGCTGGAGACGGCGCGTGTCCTGGCGTTGCGCG
genomic: GGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAGgtacttaaaa ... cgcagcgcagGTGCGTCGAGCGGCATCGGGCTGGAGACGGCGCGTGTCCTGGCGTTGCGCG
EST: gi|71448013|gb|DR829063.1|DR829063
EST:     GGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAG                         GTGCGTCGAGCGGCATCGGGCTGGAGACGGCGCGTGTCCTGGCGTTGCGCG
genomic: GGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAGgtacttaaaa ... cgcagcgcagGTGCGTCGAGCGGCATCGGGCTGGAGACGGCGCGTGTCCTGGCGTTGCGCG
EST: gi|71433932|gb|DR814982.1|DR814982
EST:     GGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAG                         GTGCGTCGAGCGGCATCGGGCTGGAGACGGCGCGTGTCCTGGCGTTGCGCG
genomic: GGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAGgtacttaaaa ... cgcagcgcagGTGCGTCGAGCGGCATCGGGCTGGAGACGGCGCGTGTCCTGGCGTTGCGCG
EST: gi|211448633|gb|FL092879.1|FL092879
EST:     GGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAG                         GTGCGTCGAGCGGCATCGGGCTGGAGACGGCGCGTGTCCTGGCGTTGCGCG
genomic: GGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAGgtacttaaaa ... cgcagcgcagGTGCGTCGAGCGGCATCGGGCTGGAGACGGCGCGTGTCCTGGCGTTGCGCG