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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTGTTCAACGCAGGAGGATGGTGCGACCAAGGGGAGGTGGTAGCCAAGCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaagtactgcaccttgctatgtttactgaagtttttccccaataacttaatagtataaatgcagtttcatggcattctccattcctggaaatt...

Basic information

species Zea mays
transcript GRMZM2G464000_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211146179|gb|FK958443.1|FK958443
EST:     GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG                         GGCTCAAG
genomic: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG
EST: gi|116822827|gb|EC866276.1|EC866276
EST:     GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG                         GGCTCAAG
genomic: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG
EST: gi|26558158|gb|CA830393.1|CA830393
EST:     GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG                         GGCTCAAG
genomic: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG
EST: gi|67024103|gb|CO452852.1|CO452852
EST:     GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG                         GGCTCAAG
genomic: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG
EST: gi|21987866|gb|BQ779394.1|BQ779394
EST:     GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG                         GGCTCAAG
genomic: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG
EST: gi|32931653|gb|CF036465.1|CF036465
EST:     TCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG                         GGCTCAAG
genomic: TCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG
EST: gi|32934961|gb|CF039773.1|CF039773
EST:     GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGG                         GGCTCAAG
genomic: GCATCTCAACGTGATCCCCGATTTCGATCCCGAACGCGTGATGGCGAAGGgtaatcttaa ... tgtcttgcagGGCTCAAG