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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCTCGAGCTCATCCCGCCGCCGGACACACCGCATGGCCATGAGGCACAGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAGgtaaccccgccggcgccgcctcattgccttgtccccctttctacctggtggtactggcttccgagattcgcggtctcgcgggtccccttggccggtttca...

Basic information

species Zea mays
transcript GRMZM2G462325_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G462325_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g10820.1 (Oryza sativa), 5'ss of exon 1
--GCCGCTCGAGCTCATCCCGCCGCCGGACACACCGCATGGCCATGAGGCACAGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAGgtaaccccgccggcgccgcctcattgccttgtccccc--tttctacctggtggtactggcttccgagattcgcggtctcgcgggtccccttggccggtttca---------
  |  |   |||      | ||  |||| |  | || ||||| |||||||||||||| || ||| |||||| |||||||||||||||||| || | | ||||||          ||     |||||| | || |||      | |  |||| || | || ||||||       | ||  |  |  ||||  ||   | |||            
AGGAGGAAGGAGGGGGCGCTGCT-CCGGCCGAATCG-ATGGCTATGAGGCACAGGGCACGCTCCGCCCCCAGCTCCCCGCTCACCCCGTCTTCAACCACAAGgt----------gcatatgctcattactttctccgttagctcccccctgatgattcttgcttccagtggctgtggattt-cttgtccatttaagcagttcttgtgcagcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76021646|gb|DT948816.1|DT948816
EST:     AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAG                         AACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
genomic: AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAGgtaaccccgc ... tttcttgcagAACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
EST: gi|50322809|gb|CO517935.1|CO517935
EST:     AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAG                         AACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
genomic: AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAGgtaaccccgc ... tttcttgcagAACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
EST: gi|93283078|gb|EB675342.1|EB675342
EST:     AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAG                         AACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
genomic: AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAGgtaaccccgc ... tttcttgcagAACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
EST: gi|50334650|gb|CO529776.1|CO529776
EST:     AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAG                         AACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
genomic: AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAGgtaaccccgc ... tttcttgcagAACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
EST: gi|50323167|gb|CO518293.1|CO518293
EST:     AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAG                         AACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
genomic: AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAGgtaaccccgc ... tttcttgcagAACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
EST: gi|211090441|gb|FL069861.1|FL069861
EST:     AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAG                         AACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
genomic: AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAGgtaaccccgc ... tttcttgcagAACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
EST: gi|89761727|gb|DY689627.1|DY689627
EST:     AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAG                         AACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC
genomic: AGGGCGCGGTCCTCCCCCACCTCCCCGCTCACCCCGTCCTCCAGCGCAAGgtaaccccgc ... tttcttgcagAACAAACAAGATACTTGGTTTCTCTGTATCTCTCATCCTCATCAATCTGGC