1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTATCCGGCTCATTTCTGCTTTCCCTTATACAGGTGGCGGAGGACACACTTACCTCTCCGAGCCTCTATGGTGGGCGGGAATGACCACAAgtatgccacgcgctcaacataaaatctactctcaattttaaactttgccaccccaactgaatttgcctagtgctggtcttcacaag
species | Zea mays |
transcript | GRMZM2G461791_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGACACACTTACCTCTCCGAGCCTCTATGGTGGGCGGGAATGACCACAA TGCTGCTTGGGGAGGTCGCAAACTTCATTGCTTACATATTTGCGCCGGCTGEST: gi|26455492|gb|CA827075.1|CA827075
genomic: AGGACACACTTACCTCTCCGAGCCTCTATGGTGGGCGGGAATGACCACAAgtatgccacg ... tcttcacaagTGCTGCTTGGGGAGGTCGCAAACTTCATTGCTTACATATTTGCGCCGGCTG
EST: AGGACACACTTACCTCTCCGAGCCTCTATGGTGGGCGGGAATGACCACAA TGCTGCTTGGGGAGGTCGCAAACTTCATTGCTTACATATTTGCGCCGGCTGEST: gi|21391006|gb|BQ529055.1|BQ529055
genomic: AGGACACACTTACCTCTCCGAGCCTCTATGGTGGGCGGGAATGACCACAAgtatgccacg ... tcttcacaagTGCTGCTTGGGGAGGTCGCAAACTTCATTGCTTACATATTTGCGCCGGCTG
EST: AGGACACACTTACCTCTCCGAGCCTCTATGGTGGGCGGGAATGACCACAA TGCTGCTTGGGGAGGTCGCAAACTTCATTGCTTACATATTTGCGCCGGCTGEST: gi|87154688|gb|DY399477.1|DY399477
genomic: AGGACACACTTACCTCTCCGAGCCTCTATGGTGGGCGGGAATGACCACAAgtatgccacg ... tcttcacaagTGCTGCTTGGGGAGGTCGCAAACTTCATTGCTTACATATTTGCGCCGGCTG
EST: AGGACACACTTACCTCTCCGAGCCTCTATGGTGGGCGGGAATGACCACAA TGCTGCTTGGGGAGGTCGCAAACTTCATTGCTTACATATTTGCGCCGGCTG
genomic: AGGACACACTTACCTCTCCGAGCCTCTATGGTGGGCGGGAATGACCACAAgtatgccacg ... tcttcacaagTGCTGCTTGGGGAGGTCGCAAACTTCATTGCTTACATATTTGCGCCGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTATCCGGCTCATTTCTGCTTTCCCTTATACAGGTGGCGGAGGACACACTTACCTCTCCGAGCCTCTATGGTGGGCGGGAATGACCACAAgtatgccacgcgctcaacataaaatctactctcaattttaaactttgccaccccaactgaatttgcctagtgctggtcttcacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG