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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTGGCGCTGCACAATGCCGGCTTCCTCGCGCAGAAGCGCCTTGCCCGGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAGgtcagccccctcgctgctccccggtcagtgccctcggtctctggacgccgccgtcccgccatcccatcccacgtctgctaggctgctagtcaaaacggga...

Basic information

species Zea mays
transcript GRMZM2G461569_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G461569_T04 (Zea mays), 5'ss of exon 1
lower sequence: 13114.m00153 (Oryza sativa), 5'ss of exon 4
CAAATTGGCGCTGCACAATGCCGGCTTCCTCGCGCAGAAGCGCCTTGCCCGGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAGgtcagccccctcgctgct-ccccggtcagtgccctcggtctctggacgccgccgtcccgccatcccatcccacgtctgctaggctgct-agtcaaaacggga
 ||  |||||||||||||||| || ||  | || ||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||  |   |   |||     |||   |       ||  |       |||    || ||   | |    || |     |  |||   || |||    |     
GAAGCTGGCGCTGCACAATGCAGGGTTTTTGGCCCAGAAGCGCCTCGCACGGGGGCTCCGCCTCAACTACACGGAGGCCGTCGCGCTCATCGCCGCCCAGgtacgtggcggtgctctcgtccccaccgaccaattcattgcgactgcgcttgtgttcctaaagcttgcccgagaggaggaaggagacttagtgtgcatat--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211467326|gb|FK982254.1|FK982254
EST:     GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAG                         ATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGAC
genomic: GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAGgtcagccccc ... gatgatacagATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGAC
EST: gi|161589667|gb|EY961389.1|EY961389
EST:     GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAG                         ATTCTTGAGCTTATTACGCGATGGAGACAAAACCGTGACAGA
genomic: GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAGgtcagccccc ... gatgatacagATTCTTGAGCTTATT-CGCGATGGAGACAAAACCGTGACAGA
EST: gi|76011932|gb|DT939102.1|DT939102
EST:     GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAG                         ATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGAC
genomic: GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAGgtcagccccc ... gatgatacagATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGAC
EST: gi|211090508|gb|FK961025.1|FK961025
EST:     GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAG                         ATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGAC
genomic: GGGGCCTCCGCCTCAACTACACCGAGGCCGTCGCGCTCATCGCCGCGCAGgtcagccccc ... gatgatacagATTCTTGAGCTTATTCGCGATGGAGACAAAACCGTGACAGACCTCATGGAC