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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCGCAGCTCGACGAGTCGCGCCTCCGCTTCGCCCGCCTCGGGGACCGCTTCCACGCCGTCTACGGCGCCCGCCCCGCGCTCTTCGCCCGCTCCCCAGgtccgtccgcctccgtcccctggactgcgtgtgtgtgcttgagctgaggctgagtctgagtctggccccgccggcgccgcgggctggctgttgctgcag

Basic information

species Zea mays
transcript GRMZM2G458549_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458549_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g61710.1 (Oryza sativa), 5'ss of exon 1
GGCGCGCAGCTCGACGAGTCGCGCCTCCGCTTCGCCCGCCTCGGGGACCGCTTCCACGCCGTCTACGGCGCCCGCCCCGCGCTCTTCGCCCGCTCCCCAGgtccgtccgcctccgtcccctggactgcgtgtgtgtgcttgagctgaggc-tgagtctgagtctggccccgccggcgccgcgggc-tggctgttgctgcag
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GGCTCTCCGCTCGACGAGGCGCGCCTCCGCTTGGCCCGCCTCGCCGACAAGTTCCACGCCGTCTACGCCGCGCGCCCCGCGCTCTTCGCCCGCTCTCCGGgtaggttgatagatggat----gggtaccactctaggtttcggtggatgcgtttgatttgatctgacaaggatgg-attgcgtgtgcgtgtgtgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74244484|gb|DT652398.1|DT652398
EST:     CTTCCACGCCGTCTACGGCGCCCGCCCCGCGCTCTTCGCCCGCTCCCCAG                         GGAGGGTCAATCTGATCGGGGAGCACATCGACTACGAGGGCTACTCGGTGT
genomic: CTTCCACGCCGTCTACGGCGCCCGCCCCGCGCTCTTCGCCCGCTCCCCAGgtccgtccgc ... gttgctgcagGGAGGGTCAATCTGATCGGGGAGCACATCGACTACGAGGGCTACTCGGTGT