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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATGGTATCTCCGGGGCTCGACTGGAACTTGTGTGCCATTACAGGTGCAAACAAATGGCTCTTGCCTCTTTGCATTCACTTTTAGCTGTAAATTTCAGgtattgattttgtgcatcttggaggactaatcattctctgaacgacatttag

Basic information

species Zea mays
transcript GRMZM2G455115_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G455115_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g18010.3 (Oryza sativa), 5'ss of exon 1
------------------------------------------------------TGGATGGTATCTCCGGGGCTCGACTGGAACTTGTGTGCCATTACAGGTGCAAACAAATGGCTCTTGCCTCTTTGCATTCACTTTTAGCTGTAAATTTCAGgtatt----gattttgtgca---tcttggaggactaatcattctctgaacgacatttag
                                                      |||| |||||||||||||| || ||||| || |||||| |||||||||||        | ||||||| ||||   ||| ||   | | | || |||||||  |      ||||| || |    |  | | | ||||||   |   |||| | ||| |||
CGGCCGAGGATGGAGGCGGTGGCACCCAACCGTCCTCTTCGTCCGGTGCCGTGTTGGACGGTATCTCCGGGGCGCGCCTGGAGCTGGTGTGCTATTACAGgtgcggtgggcggtctcttgcttcttacaatttaccactggttttagatttcagaaacgaaaggatttggtcctagtttattgtgtactaatttgttgatgaatggcatgtag