Sequence
atgc intronic sequence ATGC exonic sequenceGCAGCACTTCATCCCGAAATATTTTGATCCGAGCCACCTGAGGGAATTAGATGCAGCCGAGTACGAAGAACTGAAAGGTTTTACACCTGATCCATCAGTGgtaagaagtcttgatctacctggttttatcaattgctgttagcatatactattcaacaaaggctacttcattcatctgtgtattgttaacatgccccttctcacgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G454327_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g08430.1 (Oryza sativa), 5'ss of exon 11
GCAGCACTTCATCCCGAAATATTTTGATCCGAGCCACCTGAGGGAATTAGATGCAGCCGAGTACGAAGAACTGAAAGGTTTTACACCTGATCCATCAGTGgtaagaagtcttgatctacctggttttatcaattgctgttagcatatactattcaacaaaggctacttcattcatctgtgtattgttaacatgcccctt-ctcacgcag
||| | || ||||||||| || ||||| |||||||| ||||||| |||||||| |||||||||||||| | || | | |||||| || |||| ||| |||| || | | |||| | || || || ||| || | || || | | ||| ||| | | | | | | | |||| |
ACAGTATATCCTCCCGAAATTCTTCGATCCACGCCACCTGTGGGAATTGGATGCAGCTGAGTACGAAGAACTTGAGGGAGTGCGGCGTGATCCGTCTACGgtatgaattctttgtcctctttcttttttt--tttctttttgcacattatttttcccaca------tatatttgactgcggagcacttaaactctagtagctcatata-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87155151|gb|DY399940.1|DY399940EST: ATGCAGCCGAGTACGAAGAACTGAAAGGTTTTACACCTGATCCATCAGTG TGTGAGGACGAGTCTGTTCGCAGCGGAGATGCTCAGCCTGGATATGCTTCC
genomic: ATGCAGCCGAGTACGAAGAACTGAAAGGTTTTACACCTGATCCATCAGTGgtaagaagtc ... tctcacgcagTGTGAGGACGAGTCTGTTCGCAGCGGAGATGCTCAGCCTGGATATGCTTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAGCACTTCATCCCGAAATATTTTGATCCGAGCCACCTGAGGGAATTAGATGCAGCCGAGTACGAAGAACTGAAAGGTTTTACACCTGATCCATCAGTGgtaagaagtcttgatctacctggttttatcaattgctgttagcatatactattcaacaaaggctacttcattcatctgtgtattgttaacatgccccttctcacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC