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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTCGGCCTTCTCCGTGGAAGCCGGCGGGCCGCCGCCTCCTTTGTCCCTGTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAGgtaaagaaaccatctttccaccttctcccaccccctccggacccataggtgccaccggcatttgtcttgcgattgcttggcccagatctgcgtgcattcggcatttctcgtgcgtag

Basic information

species Zea mays
transcript GRMZM2G452633_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211507756|gb|FL332859.1|FL332859
EST:     GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAG                         ATCT--C--G--C-GTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACG
genomic: GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAGgtaaagaaac ... tcgtgcgtagATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACG
EST: gi|76010437|gb|DT937607.1|DT937607
EST:     GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAG                         ATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACG
genomic: GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAGgtaaagaaac ... tcgtgcgtagATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACG
EST: gi|71329761|gb|DR801593.1|DR801593
EST:     GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAG                         ATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACG
genomic: GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAGgtaaagaaac ... tcgtgcgtagATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACG
EST: gi|30306595|gb|CD001268.1|CD001268
EST:     GTCGTCG-GCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAG                         ATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACG
genomic: GTCGTCGTGCTCTTCCGTACCGCCATTCCCTAGCACTGTCCACGGGCGAGgtaaagaaac ... tcgtgcgtagATCTCGCGTGTACGGTGTACCTCGTTTCCCTCGGCGGGTGGATCAGTGACG