1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGTGGATCCTCCGCCGCGCCGCCGCCCCTTTATCTGAGCCATCCAGCGGAGCGGAGATCCATCCGTTGGGGCGTGGATTCAGTCCCTTCCCTTCTCGGTGgtgagtccgcttgccccgcatgggtgatgggtgaaggtggggtgggttcgctcgtggttccaggggtcggttttgctctcgatcaaaaccgaaacttttc...
species | Zea mays |
transcript | GRMZM2G449355_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGGAGATCCATCCGTTGGGGCGTGGATTCAGTCCCTTCCCTTCTCGGTG GTTACTCCCACAGNGAGGGTAACTCGAATAACTGTGAGTGCTACTCTGAGAEST: gi|211384520|gb|FL378682.1|FL378682
genomic: GCGGAGATCCATCCGTTGGGGCGTGGATTCAGTCCCTTCCCTTCTCGGTGgtgagtccgc ... cttcctgcagGTTACTCCCACAGTGAGGGTAACTCGAATAACTGTGAGTGCTACTGTGAGA
EST: GCGGAGATCCATCCGTTGGGGCGTGGATTCAGTCCCTTCCCTTCTCGGTG GTTACTCCCACAGTGAGGGTAACTCGAATAACTGTGAGTGCTACTCTGAGAEST: gi|211539119|gb|FL390806.1|FL390806
genomic: GCGGAGATCCATCCGTTGGGGCGTGGATTCAGTCCCTTCCCTTCTCGGTGgtgagtccgc ... cttcctgcagGTTACTCCCACAGTGAGGGTAACTCGAATAACTGTGAGTGCTACTGTGAGA
EST: GCGGAGATCCATCCGTTGGGGCGTGGATTCAGTCCCTTCCCTTCTCGGTG GTTACTCCCACAGTGAGGGTAACTCGAATAACTGTGAGTGCTACTCTGAGAEST: gi|30704456|gb|CD058530.1|CD058530
genomic: GCGGAGATCCATCCGTTGGGGCGTGGATTCAGTCCCTTCCCTTCTCGGTGgtgagtccgc ... cttcctgcagGTTACTCCCACAGTGAGGGTAACTCGAATAACTGTGAGTGCTACTGTGAGA
EST: GCGGAGATCCATCCGTTGGGGCGTGGATTCAGTCCCTTCCCTTCTCGGCG GTTACTCCCACAGTGAGGGTAACTCGAATAACTGTGAGTGCTACTGTGAGA
genomic: GCGGAGATCCATCCGTTGGGGCGTGGATTCAGTCCCTTCCCTTCTCGGTGgtgagtccgc ... cttcctgcagGTTACTCCCACAGTGAGGGTAACTCGAATAACTGTGAGTGCTACTGTGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGGATCCTCCGCCGCGCCGCCGCCCCTTTATCTGAGCCATCCAGCGGAGCGGAGATCCATCCGTTGGGGCGTGGATTCAGTCCCTTCCCTTCTCGGTGgtgagtccgcttgccccgcatgggtgatgggtgaaggtggggtgggttcgctcgtggttccaggggtcggttttgctctcgatcaaaaccgaaacttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccccgc