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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAGGTCCGGCGCCGCCACCTCGTTTCTCGAGCGCCGCGAGTCGGAGCGCGCTCTCCACTTTGTCAAATACCAGGGCTTCGGCAACGACTTCATAATGgtgtgactgtttctgtttcccaactctcttcaactattccgcgccgtgcagtgttcatttgggtggtgaccccacgtcgagaatttgtgcaatccgtgatgttctgatttttgaaagctctgctactgaagacacttaaattttgtttgcttgttcatgtttcgattcgtag

Basic information

species Zea mays
transcript GRMZM2G447505_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G447505_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g37960.1 (Oryza sativa), 5'ss of exon 1
CCCCAGGTCCGGCGCCGCCACCTCGTTTCTCGAGCGCCGCGAGTCGGAGCGCGCTCTCCACTTTGTCAAATACCAGGGCTTCGGCAACGACTTCATAATGgtgtgac-tgtttctgtt--tcccaactctcttcaactattccgcgccgtgcagtgttcatttgggtggtgaccccacgtcgagaatttgtgcaatccgtgatgttctgatttttgaaagctctgctactgaagacacttaaattt---tgtttgcttg-ttcatgtttcgattcgtag-------
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CCCCAGGTCGGCCGCCGCCGCCGCGTTCCTCGAGCGCCGCGAGTCGGAGCGCGCCCTCCACTTCGTCAAGTACCAGGGCCTTGGGAACGACTTCATCATGgtgcgacgccttactagcgcttccatttcacttttcttagaac-cgatttgttgcttcccttcaatttttttaatcccctttgtaatcagt-cgcttcgtc-tgcacgaattagagcagtctctgctgctttagacgcggtgatttctgtatttttttgatttagtcttggattttttttcttcag