1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTCCAGAAAAGAAAAAGAACTATCCATCCCGCTGTGAGCCAAGCCAGCCCAGCTCCGGCGACTGGCAGATGTTTCAGGGTCCCCGTCCGTTTGCCGCAGgtccaccctctaattctttctccttttattttactttttaataaataaaaggggtttcctctttacaagattcttatgccgatgacccgatcgggttctttttatacggagtgttttttttttgaaacgaagtacag
species | Zea mays |
transcript | GRMZM2G447433_T08 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGCTCCGGCGACTGGCAGATGTTTCAGGGTCCCCGTCCGTTTGCCGCAG GTTCCCTGGATATEST: gi|71439499|gb|DR820549.1|DR820549
genomic: CAGCTCCGGCGACTGGCAGATGTTTCAGGGTCCCCGTCCGTTTGCCGCAGgtccaccctc ... cgaagtacagGTTCCCTG-ATAT
EST: CAGCTCCGGCGACTGGCAGATGTTTCAGGGTCCCCGTCCGTTTGCCGCAG GTTCCCTGATATCGGTGGCCAGCAGCCGACTTTGTGGTTAGTCCATTCTCTEST: gi|78114830|gb|DV533218.1|DV533218
genomic: CAGCTCCGGCGACTGGCAGATGTTTCAGGGTCCCCGTCCGTTTGCCGCAGgtccaccctc ... cgaagtacagGTTCCCTGATATCGGTGGCCAGCAGCCGACTTTGTGGTTAGTCCATTCTCT
EST: CAGCTCCGGCGACTGGCAGATGTTTCAGGGTCCCCGTCCGTTTGCCGCAG GTTCCCTGATATCGGTGGCCAGCAGCCGACTTTGTGGTTAGTCCATTCTCTEST: gi|101397320|gb|EB820583.1|EB820583
genomic: CAGCTCCGGCGACTGGCAGATGTTTCAGGGTCCCCGTCCGTTTGCCGCAGgtccaccctc ... cgaagtacagGTTCCCTGATATCGGTGGCCAGCAGCCGACTTTGTGGTTAGTCCATTCTCT
EST: CAGCTCCGGCGACTGGCAGATGTTTCAGGGTCCCCGTCCGTTTGCCGCAG GTTCCCTGATATCGGTGGCCAGCAGCCGACTTTGTGGTTAGTCCATTCTCT
genomic: CAGCTCCGGCGACTGGCAGATGTTTCAGGGTCCCCGTCCGTTTGCCGCAGgtccaccctc ... cgaagtacagGTTCCCTGATATCGGTGGCCAGCAGCCGACTTTGTGGTTAGTCCATTCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCAGAAAAGAAAAAGAACTATCCATCCCGCTGTGAGCCAAGCCAGCCCAGCTCCGGCGACTGGCAGATGTTTCAGGGTCCCCGTCCGTTTGCCGCAGgtccaccctctaattctttctccttttattttactttttaataaataaaaggggtttcctctttacaagattcttatgccgatgacccgatcgggttctttttatacggagtgttttttttttgaaacgaagtacag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG