Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTCCACGCAGCGCGCTCCTCGATCCCCAACAGGCAACAGCCCAGCCGCTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcctctcgacgaatccacgtctgtcggtttagtaccaatgcgtctgctccaatcgcgtcttctaacgcgaatttgcatcccctctgtcgcag

Basic information

species Zea mays
transcript GRMZM2G446960_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211459396|gb|FL082784.1|FL082784
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|71440182|gb|DR821232.1|DR821232
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211459404|gb|FL082792.1|FL082792
EST:     TGTCGCCCTCGTTCCGTAGTAC-GCGCCG-CAGATCGTCAGTYCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: TGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGT-CACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|15499458|gb|BI595971.1|BI595971
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCG-CAGATCGTCAGTCACCATG                         ATCATCT-CAAG-AGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|78084267|gb|DV512660.1|DV512660
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211351550|gb|FL082748.1|FL082748
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCG-CAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211351551|gb|FL082749.1|FL082749
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211353957|gb|FL082763.1|FL082763
EST:     CTGTCGCCCTCGTTCCGTAGTACGKCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|71327344|gb|DR800282.1|DR800282
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|33101161|gb|CF061121.1|CF061121
EST:     ACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: ACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211356347|gb|FL082769.1|FL082769
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|101393392|gb|EB818627.1|EB818627
EST:     GTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: GTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|71763591|gb|DR961528.1|DR961528
EST:     CTGTCGCCCTCGTTCCGTAGTACAACGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211356352|gb|FL082774.1|FL082774
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCG-CAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211353958|gb|FL082764.1|FL082764
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCG-CAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211351553|gb|FL082751.1|FL082751
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|76919621|gb|DV167805.1|DV167805
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211356358|gb|FL082780.1|FL082780
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|74235891|gb|DT643805.1|DT643805
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|78105937|gb|DV524355.1|DV524355
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211353956|gb|FL082762.1|FL082762
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCG-CAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211356349|gb|FL082771.1|FL082771
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|71449328|gb|DR830378.1|DR830378
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|60396230|gb|DN229099.1|DN229099
EST:     GCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: GCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211356345|gb|FL082767.1|FL082767
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211353950|gb|FL082756.1|FL082756
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|31405660|gb|CD484392.1|CD484392
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|71332585|gb|DR803267.1|DR803267
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|33467936|gb|CF244985.1|CF244985
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211461925|gb|FL082802.1|FL082802
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|116817760|gb|EC860670.1|EC860670
EST:     CTGTAGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211353959|gb|FL082765.1|FL082765
EST:     CGTCGTCCCCCGCTCCGTAGTACGGCGCCGCCAGATCGTCAGCCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTGTTCCATG
genomic: TGTCG-CCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211459394|gb|FL082782.1|FL082782
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211353952|gb|FL082758.1|FL082758
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCG-CAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211353949|gb|FL082755.1|FL082755
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCG-CAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211353955|gb|FL082761.1|FL082761
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|60354161|gb|DN221134.1|DN221134
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211461922|gb|FL082799.1|FL082799
EST:     CTGTCGCCNTCGTTCCGTAGTACGGCGCSGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211459407|gb|FL082795.1|FL082795
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211353946|gb|FL082752.1|FL082752
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|15499445|gb|BI595958.1|BI595958
EST:     GTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: GTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|67023433|gb|CO452182.1|CO452182
EST:     CTGTCGCCCTCGTTCCCCAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCC-TG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211459399|gb|FL082787.1|FL082787
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211356354|gb|FL082776.1|FL082776
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCG-CAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211459403|gb|FL082791.1|FL082791
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCG-CAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAKATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|28931249|gb|CB334610.1|CB334610
EST:     CTGTCGCCCTCGTTCCGTAGTACGG-GCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211461928|gb|FL082805.1|FL082805
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCG-CAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|61118694|gb|DN559655.1|DN559655
EST:     TCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: TCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211459402|gb|FL082790.1|FL082790
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211459395|gb|FL082783.1|FL082783
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211356346|gb|FL082768.1|FL082768
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCG-CAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211459398|gb|FL082786.1|FL082786
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCG-CAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|32913276|gb|CF018088.1|CF018088
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211459406|gb|FL082794.1|FL082794
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCG-CAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|71327347|gb|DR800283.1|DR800283
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|74245943|gb|DT653857.1|DT653857
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211403729|gb|FL082320.1|FL082320
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211459397|gb|FL082785.1|FL082785
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211356353|gb|FL082775.1|FL082775
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|87156968|gb|DY401757.1|DY401757
EST:     TGTCGCCCCCCGCTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: TGTCG-CCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211461923|gb|FL082800.1|FL082800
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|22521236|gb|BU080047.1|BU080047
EST:     TCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: TCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211356348|gb|FL082770.1|FL082770
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211353954|gb|FL082760.1|FL082760
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
EST: gi|211356357|gb|FL082779.1|FL082779
EST:     CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATG                         ATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG
genomic: CTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 29 (upstream exon), 21 (downstream exon)
Score: 1

TCTCTCCACGCAGCGCGCTCCTCGATCCCCAACAGGCAACAGCCCAGCCGCTGTCGCCCTCGTTCCGTAGTACGGCGCCGCCAGATCGTCAGTCACCATGgttagcgcct ... tctgtcgcagATCATCTCCAAGAAGAACCGCCGCGAGATCTGCAAATACCTCTTCCATG




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