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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGGCGCGTGCTTCGACGAAAACCAGGCCGTGCTCGACCTCACCCCCGGCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAGgtgagggatccctcacatattacacactcactcgcatattgccccctttgaacccgcaacctcatttactagtggtttatctctttcgattccacccggc...

Basic information

species Zea mays
transcript GRMZM2G445478_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148929994|gb|EE285845.2|EE285845
EST:     GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAG                         ACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
genomic: GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAGgtgagggatc ... gttgctgtagACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
EST: gi|148965941|gb|EE016855.2|EE016855
EST:     GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAG                         ACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
genomic: GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAGgtgagggatc ... gttgctgtagACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
EST: gi|149090684|gb|EE180010.2|EE180010
EST:     GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAG                         ACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
genomic: GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAGgtgagggatc ... gttgctgtagACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
EST: gi|91053068|gb|EB163486.1|EB163486
EST:     GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAG                         ACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
genomic: GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAGgtgagggatc ... gttgctgtagACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
EST: gi|148972705|gb|EE023666.2|EE023666
EST:     GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAG                         ACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
genomic: GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAGgtgagggatc ... gttgctgtagACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
EST: gi|93284639|gb|EB676903.1|EB676903
EST:     GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAG                         ACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
genomic: GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAGgtgagggatc ... gttgctgtagACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
EST: gi|149079355|gb|EE168332.2|EE168332
EST:     GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAG                         ACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
genomic: GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAGgtgagggatc ... gttgctgtagACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
EST: gi|148967220|gb|EE018415.2|EE018415
EST:     GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAG                         ACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG
genomic: GCCGCAACGGGACCGCCGGGGGCCTCGGTGGCGCCGTCCTCCGCCTCAAGgtgagggatc ... gttgctgtagACTGCTTCGCCTCAGAGCTGGACATGCATGGACCTGTACGTGTTCGCAACG