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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGATGGACGGTGCTGCAGCGGTCAAGCTGGTACCCGGTGAGGCCGGGTACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCGgtgagtgccgccgatccgtgcgaggtggggtcgatctggtgtttggcgcggtgaatggttgatcagtcgctgccgctcgagggagaggttgcccgctgcg...

Basic information

species Zea mays
transcript GRMZM2G443985_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G443985_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 5'ss of exon 1
GGCGATGGACGGTGCTGCA-GCGGTCAAGCTGGTACCCGGTGAGGCCGGGTACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCGgtgagtgccgccgatccgtgcgaggtggggtcgatctggtgtttgg-cgcggtgaatggttgatcagtcgctgccgctcgagggagaggttgcccgctgcg--
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GGCGGCGG-CGGCGAAGCCCGAGGTGAAGCTGGTGACCGGGGATGGCGGGTACGTGCTCGAGGACGTGCCGCATGTGTGCGACTACCTCCCCGATCTACCGgtgagt--ctccgccgcttgccggccgtctcctcctctgcgttggatcgatctggggattggggttgggaggggaggggaagggagggattgcc-gcggcgct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148972520|gb|EE023481.2|EE023481
EST:     ACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCG                         ACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTGAA
genomic: ACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCGgtgagtgccg ... catgttgcagACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTGAA
EST: gi|211132977|gb|FL170882.1|FL170882
EST:     ACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCG                         ACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTAAA
genomic: ACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCGgtgagtgccg ... catgttgcagACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTGAA
EST: gi|211132967|gb|FL170872.1|FL170872
EST:     ACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCG                         ACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTGAA
genomic: ACGTCTTAGAAGACGTGCCGCACGTGTCGGACTACCTCCCCGATCTCCCGgtgagtgccg ... catgttgcagACCTACTCAAATCCATTACAAGATAACCCGGCATACTCTGTTGTGAA