Sequence
atgc intronic sequence ATGC exonic sequenceGAGACCGATCTGGGACGCAGTCGACTCACGCCAGTACAAGCCCGCGCTCAAGCTCTGCACCGCGCTCCTCGCCAAGCACCCTACATCCCCCTACGCGCTCgtgagcactttatttatctcagctgaacctccttttctttttggctattttagtgtacttttggcgaatctggcgtgaaacggctgtttgggcaatcagc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G442057_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g27870.1 (Oryza sativa), 5'ss of exon 1
GAGACCGATCTGGGACGCAGTCGACTCACGCCAGTACAAGCCCGCGCTCAAGCTCTGCACCGCGCTCCTCGCCAAGCACCCTACATCCCCCTACGCGCTCgtgagca---ctttatttatctcagctgaacctccttttctttttg--gctattttagt-gtacttttggcgaatctggcgtg--aaacggctgtttgggcaatcagc
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GCGGCCGATCTGGGACGCCGTCGACTCGCGCCAGTACAAGGCTGCGCTCAAGCTCTGCACCGCGCTCCTCGCCAAGCACCCGACCTCCCCTTACGTCCTCgtgagtggacctctaccctccccctccctcgctcggtttgtttctggagtagctttggttgcggttttgatgaatctggcgcgccaatgggctaagtcgg--------
upper sequence: GRMZM2G442057_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA11G29640.1 (Glycine max), 5'ss of exon 2
GAGACCGATCTGGGACGCAGTCGACTCACGCCAGTACAAGCCCGCGCTCAAGCTCTGCACCGCGCTCCTCGCCAAGCACCCTACATCCCCCTACGCGCTCgtgagcactttatttatctcagctgaacctccttttctttttggctattttagtgtacttttggcgaatctggcgtgaaacggctgtttgggcaatcagc
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CCGCCCAATATGGGACGCCATTGATTCCCGCCAGTTCAAGAACGCTCTCAAGCACGTCTCCACGCTCCTCGCCAAGCACCCTAATTCCCCCTACGCACTCgtaagaaccctaatttgc-------accctcattacattcgttgatatcgaattcgccttgttttttctatgctgctgaatg-cggattttccaattag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78084721|gb|DV513114.1|DV513114EST: AGCTCTGCACCGCGCTCCTCGCCAAGCACCCTACATCCCCCTACGCGCTC GCCCTCAAGGCTCTTATTCT
genomic: AGCTCTGCACCGCGCTCCTCGCCAAGCACCCTACATCCCCCTACGCGCTCgtgagcactt ... ctcatttcagGCCCTCAAGGCTCTTATTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGACCGATCTGGGACGCAGTCGACTCACGCCAGTACAAGCCCGCGCTCAAGCTCTGCACCGCGCTCCTCGCCAAGCACCCTACATCCCCCTACGCGCTCgtgagcactttatttatctcagctgaacctccttttctttttggctattttagtgtacttttggcgaatctggcgtgaaacggctgtttgggcaatcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC