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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTTGCTAAGGCTGTGGCAAATGAGGTTGATGCTAATTTCATAAACATATCGATGTCAAGTATCTCTTCAAAGgtacttatcgattagatgagcctctatttttaggcagtacatacattatatcatctaaataacctattttctag

Basic information

species Zea mays
transcript GRMZM2G438355_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G438355_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g22420.1 (Oryza sativa), 5'ss of exon 22
-------------------------ATGCTTGCTAAGGCTGTGGCAAATGAGGTTGATGCTAATTTCATAAACATATCGATGTCAAGTATCTCTTCAAAGgtacttatcgattagatgagcctctatttttaggca-gtacatacattatat-catct-aaataacctattttctag------
                         |||||||| || |||||||| |  |||| || ||| ||||||||||| ||||| ||||| || ||||||||||||||| ||  | |   |||     |   |   | |    ||   | |||| |   ||||| ||| |   | |    |        
TGGCCCGCCTGGTACAGGAAAGACAATGCTTGCCAAAGCTGTGGCTACAGAGGCTGGTGCGAATTTCATAAATATATCAATGTCGAGCATCTCTTCAAAGgtattttactaaatgattgctattagtccatggttttgtttttgcattttgggcatctgaaacattgtgtaccattaccacag

upper sequence: GRMZM2G438355_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 21
-------------------------ATGCTTGCTAAGGCTGTGGCAAATGAGGTTGATGCTAATTTCATAAACATATCGATGTCAAGTATCTCTTCAAAGgtacttatcg--attagatgagcctctatttttaggcagtacatacattatatcatctaaataacctattttctag------------
                         |||||||| ||||| || |||| |||||  | ||| ||||| || |||||||| ||||| |||||| |||||||||||  |||    || | |   |   ||||          |    |  |  | |  |  |||||    |  | ||              
TGGGCCTCCTGGGACTGGAAAAACAATGCTTGCGAAGGCGGTTGCAACTGAGGCAGGTGCAAATTTTATCAACATATCAATGTCTAGTATCACTTCAAAGgtaaatatgtgcatcaaaatggtgactatgcagctctcttttgcaagtcttgttttgaaaatatttgacatcctgatattgcttgcag