1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTAGGGAAATGGCGGAGGTGAAGCCGGAGGAGATAAGCCATCCGCCCATGGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtacccaagcttggagctgaaacgagttcacatccgcgttggaattcggttctctgaatctgttttgtgttttcgtctttttttttgcttttcatttcag
species | Zea mays |
transcript | GRMZM2G437859_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|50339069|gb|CO534195.1|CO534195
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|74244049|gb|DT651963.1|DT651963
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|149001123|gb|EE038382.2|EE038382
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|78084450|gb|DV512843.1|DV512843
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|211102812|gb|FL069930.1|FL069930
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|78081194|gb|DV509606.1|DV509606
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|211100342|gb|FL069923.1|FL069923
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|71439895|gb|DR820945.1|DR820945
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|74243489|gb|DT651403.1|DT651403
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|149071736|gb|EE160129.2|EE160129
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|211102808|gb|FL069926.1|FL069926
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|71431026|gb|DR812076.1|DR812076
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|76923378|gb|DV169457.1|DV169457
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|74238882|gb|DT646796.1|DT646796
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|74240437|gb|DT648351.1|DT648351
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|33467816|gb|CF244865.1|CF244865
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|91049745|gb|EB160163.1|EB160163
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|71449525|gb|DR830575.1|DR830575
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|211102810|gb|FL069928.1|FL069928
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTEST: gi|211102809|gb|FL069927.1|FL069927
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACT
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|50331687|gb|CO526813.1|CO526813
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|91878994|gb|EB408951.1|EB408951
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCCAGTACTGCATCGACTCCCACCCTCCCTGGG GCGAGGCGATCATACTGEST: gi|93016333|gb|EB641853.1|EB641853
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGEST: gi|211100339|gb|FL069920.1|FL069920
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|211100336|gb|FL069917.1|FL069917
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|71310987|gb|DR791795.1|DR791795
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|211100341|gb|FL069922.1|FL069922
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGGEST: gi|71438783|gb|DR819833.1|DR819833
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
EST: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGG GCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
genomic: GGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtaccc ... ttcatttcagGCGAGGCGATCATACTGGGCTTCCAGCACTACATACTGGCGCTGGGCACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTAGGGAAATGGCGGAGGTGAAGCCGGAGGAGATAAGCCATCCGCCCATGGAGCAGCTCCAGGGGTTCGAGTACTGCATCGACTCCAACCCTCCCTGGGgtgcgtacccaagcttggagctgaaacgagttcacatccgcgttggaattcggttctctgaatctgttttgtgttttcgtctttttttttgcttttcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC