Sequence
atgc intronic sequence ATGC exonic sequenceATGGACGAGGAGTACGACGTGATCGTTCTGGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTCGACGGCCTCAAGgtgagcaccgaccacccgcctcccggtaacggcaatcggacctcaccccagtccccgagtccgatctgccactctcccccgcacgtacccggacgccgca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G435373_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g23860.1 (Oryza sativa), 5'ss of exon 1
-------------ATGGACGAGGAGTACGACGTGATCGTTCTGGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTCGACGGCCTCAAGgtg---agcaccgacc--acccgcctcccggtaacggcaatcggacc--tcaccccagtccccgagtccgatctgccactctcccccgcacgtacccggacgccgca
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GCCGCTCGCCGCCATGGATGAGGAGTACGACGTGATCGTGCTGGGGACGGGCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctctcctacccaatccatccgccgcctcccgtgctcggatcggtgctccccatcgtcg---tcgatccgtagatcgccccc-cacttcatctcat-ctg--
upper sequence: GRMZM2G435373_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g34540.1 (Oryza sativa), 5'ss of exon 1
-------------ATGGACGAGGAGTACGACGTGATCGTTCTGGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTCGACGGCCTCAAGgtgagcaccgaccacccgcctcccggtaacggcaatcggacctcaccccagtccccgagtccgatctgccactctcccccgcacgtacccg--gacgccgca
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ACGAGCAGGAGCCATGGATGAGGAGTACGACGTGATCGTGCTCGGGACGGGCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacgtggctagggctctcgtctctctctctctctctctctctctctctctcacccgctcgccgccggctactagcttccgcagatgctcgccgtcgccg--
upper sequence: GRMZM2G435373_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G24480.1 (Glycine max), 5'ss of exon 1
ATGGACGAGGAGTACGACGTGATCGTTCTGGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTCGACGGCCTCAAGgtgagcaccgaccacccgcctcccgg----taacggcaatcggacctcaccccagtccccgagtccgatctgccactctcccccgcacgtacccggacgccgca
||||| |||| || ||| |||||||| |||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | || || | |||| | || | | | ||| || || || | |
ATGGATGAGGGGTGCGATGTGATCGTGTTGGGCACGGGTCTCAAGGAGTGCATTCTCAGCGGTCTTCTCTCTGTCGATGGCCTCAAGgtactcatcagtttcctatttctttaattttcttttcaatagatccaattctcgcatgttaattcctatttgttgttcgattcag-------------------
upper sequence: GRMZM2G435373_T02 (Zea mays), 5'ss of exon 1
lower sequence: EDP02072 (Chlamydomonas reinhardtii), 5'ss of exon 2
ATGGACGAGGAGTACGACGTGATCGTTCTGGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTCGACGGCCTCAAGgtgagcaccgaccacccgcctcccggtaacggcaatcggacctcaccccagtccccgagtccgatctgccactctcccccgcacgtacccggacgccgca
|||||||||| ||||||||||| ||||||||||| || |||||||||||| |||| || || || || || ||| |||||| | | || || | || | |||| ||| ||| | || || | | | || | | | | || | |
---AACGAGGAGTATGACGTGATCGTGCTGGGCACGGGTCTGAAGGAGTGCATCATCAGTGGCCTGCTGTCGGTGGACAAGAAGAAGgtgcgggacctagacatgcg-cgcgaatgctgcaaccgggcctg---cttttcttcgcgcgctggccgctcaccatcgcaacctgttgcag---------
upper sequence: GRMZM2G435373_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S20_16V6.1 (Physcomitrella patens), 5'ss of exon 1
-------------ATGGACGAGGAGTACGACGTGATCGTTCTGGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTCGACGGCCTCAAGgtgagcaccgaccacccgcct---cccggtaacggcaatcggacct-caccccagtccccgagtccgatctgccactctcccccgcacgtacccggacgccgca
||||| || ||||| |||||||| || || ||||| || |||||||| || |||||||| || || ||||||||||| | ||||||||| | | | || || || || | || | || || | | || | | | || | |
CCGAGATTTCGTCATGGATGAAGAGTATGACGTGATTGTACTCGGCACTGGCCTCAAGGAATGTATCCTCAGTGGACTTCTCTCTGTCGATCGTCTCAAGgtggtgcctcttcctcgatctgaaccttttataggtttgcagatcagtgtttttgtttgtttgttttgtttttatttcctttctcttcttctccttaggt----
upper sequence: GRMZM2G435373_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S167_1V6.1 (Physcomitrella patens), 5'ss of exon 1
-------------ATGGACGAGGAGTACGACGTGATCGTTCTGGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTCGACGGCCTCAAGgtgagcaccgaccac---ccgcctcccggtaacggcaatcggacctcac--cccagtccccgagtccgatctgccactctcccccgcacgtacccggacgccgca
||||| || |||||||| ||||| || |||||||| ||||| ||||||||||||||||| || || ||||| || || | ||||||||| | || | | || | | |||| | | || ||| || |||| | | || ||| || | |
TGGAGCCGGCACCATGGATGAAGAGTACGATGTGATTGTGCTGGGCACCGGGCTGAAGGAGTGCATCCTCAGTGGGCTACTCTCCGTGGATCGTCTCAAGgtgggtgg-gatcgcagatcgtggttgatctgtgtgactcgggcggtgtggcgtagctgccggctc---tctgggtgtagcgtggatttgtggtcgg-cgaggga
upper sequence: GRMZM2G435373_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ11673 (Selaginella moellendorffii), 5'ss of exon 1
-------------ATGGACGAGGAGTACGACGTGATCGTTCTGGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTCGACGGCCTCAAGgtgagcaccgaccacccgcctcccggtaacggcaatcggacctcaccccagtccccgagtccgatctgccactctcccccgcacgtacccggacgccgca
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GTTTTGGTGCGCCATGGATGAGGAGTACGACGTCATTGTGCTGGGGACGGGTCTCAAGGAGTGCATCCTCAGCGGGCTGCTGTCGGTGGATCGTCTCAAGgtgggtttttctcgatcggagttggaagacatctctctcgcag---------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32850140|gb|CD989821.1|CD989821EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTCGACGGCCTCAAG GTTCTACACATGGATAGAAATGATTACTACGGAGGAGATTCCACCTCCCTA
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTCGACGGCCTCAAGgtgagcaccg ... gcttttacagGTTCTACACATGGATAGAAATGATTACTACGGAGGAGATTCCACCTCCCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGACGAGGAGTACGACGTGATCGTTCTGGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTCGACGGCCTCAAGgtgagcaccgaccacccgcctcccggtaacggcaatcggacctcaccccagtccccgagtccgatctgccactctcccccgcacgtacccggacgccgca
- - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc