1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACGGCTATTCGCGGCTGAACGGGCGGCGGCGATGAACGGAGCGAGCGCCGGCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaatgcccctcctccctatgtctcttcccctctgcgccttttttttcccctcccttagttcctctgttgcgggtgtggcgtggatctgtgcgg...
species | Zea mays |
transcript | GRMZM2G433942_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|26558272|gb|CA830507.1|CA830507
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|149046484|gb|EE048006.2|EE048006
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|20512953|gb|BQ280139.1|BQ280139
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGTTGTGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|91868690|gb|EB400117.1|EB400117
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|148953730|gb|EC899096.2|EC899096
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|26456686|gb|CA828269.1|CA828269
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|50332834|gb|CO527960.1|CO527960
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GTGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGGTCCCTGEST: gi|148990678|gb|EE032074.2|EE032074
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|76921843|gb|DV168729.1|DV168729
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|148944134|gb|EC889222.2|EC889222
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|149106439|gb|EE188329.2|EE188329
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|148973614|gb|EE024722.2|EE024722
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|21987320|gb|BQ778848.1|BQ778848
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGG-GGGGAGGCGCCGCTGG-GTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|76017769|gb|DT944939.1|DT944939
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|211006833|gb|FL318418.1|FL318418
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|29167811|gb|CB411071.1|CB411071
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|148943919|gb|EC888999.2|EC888999
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTGEST: gi|211012385|gb|FL318450.1|FL318450
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
EST: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAAT GTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTS
genomic: GCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaa ... tctcttgcagGTGTTTCTACTGAAGGGGAGGTTCATATTTGGCCCTGATGCAAGATCCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGCTATTCGCGGCTGAACGGGCGGCGGCGATGAACGGAGCGAGCGCCGGCGCCGGCGGGGAGGCGCCGCTGGTGTACAAGGCCTGGAAGGGGAACAATgtgagcggaatgcccctcctccctatgtctcttcccctctgcgccttttttttcccctcccttagttcctctgttgcgggtgtggcgtggatctgtgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc