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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCACGCCGTCTTCCCCATCTCGCGCAGCGCTACTGCCGGCTGTCCGGAGTCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtcccatctcccgctctcgttctcctccgttccttctctctctaccgcgcacggacagcgctgccggtctcttgatctgccccgatccatcgc...

Basic information

species Zea mays
transcript GRMZM2G431350_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30591255|gb|CD052281.1|CD052281
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|211420227|gb|FL011433.1|FL011433
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|32863613|gb|CF003295.1|CF003295
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|22819983|gb|BU500073.1|BU500073
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|211420234|gb|FL011440.1|FL011440
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|211420230|gb|FL011436.1|FL011436
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|22545780|gb|BU098154.1|BU098154
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCG-GAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|30591528|gb|CD052418.1|CD052418
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|211270446|gb|FL011426.1|FL011426
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|211270449|gb|FL011429.1|FL011429
EST:     CCCGACCACCGTCCTCGRGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: CCCGACCACCGTCCTCG-GCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|211420231|gb|FL011437.1|FL011437
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|86468241|gb|DY234611.1|DY234611
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAGTG                         GAGACCTGCCCCTCGGAGAAAAACATCCTCTTGCTGGACTCAGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|211420229|gb|FL011435.1|FL011435
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|37622066|gb|CF675119.1|CF675119
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCCTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|211420226|gb|FL011432.1|FL011432
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|211420232|gb|FL011438.1|FL011438
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCGTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|30591531|gb|CD052420.1|CD052420
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
EST: gi|33093855|gb|CF053849.1|CF053849
EST:     TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATG                         GAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG
genomic: TCCCGACCACCGTCCTCGGCTCCCCGCCGTGAATCCATCATCCCGTAATGgtaggtagtc ... tttgatgcagGAGACCTGCCCCTCGGTGAAGAACATCCTCTTGCTGGACTCGGAGGGAAAG