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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCACTTGGCTATGATAACTGTGCAGCCTGAAAATCGAAGTAGAAACAAGATTTTTCACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtattctatttatttctgtgcttgtgttaccaatttaatgtgaaactgggttaggtcctcatctaattctttgccgcttgctcctgtcttccccatatgcagtagcctgtactacaacgaaaagaacaccatcatgtttgatgatctaagaaggaatttcgtcatgaatccacag

Basic information

species Zea mays
transcript GRMZM2G427526_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G427526_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g65450.1 (Oryza sativa), 5'ss of exon 5
GGATCACTTGGCTATGATAACTGTGCAGCCTGAAAATCGAAGTAGAAACAAGATTTTTCACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgttagtattctatttatttctgtgcttgtgttaccaatttaatgtgaaactgggttaggtcctcatctaattctttgccgcttgctcctgtcttccccatatgcagtagcctgtactacaacgaaaagaacaccatcatgtttgatgatctaagaaggaatttcgtcatgaatccacag
|||||||||||| ||||||||||||||  ||||||| |       ||| || | |||| | ||||||||||||||||||||||||||||||||||| ||||||||||              |||   ||| |||        ||||||  || |   | | |||||  |||| |||||   ||||| |||| |    |||||||||                                                                         
GGATCACTTGGCGATGATAACTGTGCAATCTGAAAACCTGTCAGAAAAGAAAACTTTTGATTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCCGAGgttagta--------------gtggc-gtggtac--------tgtgaatttgtgactgattctcattgaattatttgctcattgcttctgtttctttcatatgcag-------------------------------------------------------------------------

upper sequence: GRMZM2G427526_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G13320.1 (Glycine max), 5'ss of exon 5
---------GGATCACTTGGCTATGATAACTGTGCAGCCTGAAAATCGAAGTAGAAACAAGATTTTTCACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgt--tagtattctatttatttctgtgc---ttgtgttaccaatttaatgtgaaactgggttaggtcctcat-ctaattctttgccgcttgctcctgtcttccccatatgcagtagcctgtactacaacgaaaagaacaccatcatgtttgatgatctaagaaggaatttcgtcatgaatccacag
          || ||| |||| ||||| || || ||| ||     |||  |         | | ||| | ||||||||||||||| | || |||||| |||||||||||||  || ||| | ||  | |     ||   || | ||   |||  || || ||   |  ||| ||   |||  |  |||  |    |   | || |||| |                                                                                    
CGCACTTCTTGACCACATGGCAATGATCACGGTTCAGACTTCTTCTCGTGG---------GGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtaatattatgcaataaaataacacgccatttattttcttaatggaaagttaa-tagaattatgttagcatatttgttcaatcatacactcccccgtctac------------------------------------------------------------------------------------

upper sequence: GRMZM2G427526_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA05G30160.1 (Glycine max), 5'ss of exon 5
---------GGATCACTTGGCTATGATAACTGTGCAGCCTGAAAATCGAAGTAGAAACAAGATTTTTCACTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCTGAGgt-tagtattctatttatttctgtgcttgtgttaccaatttaatgtgaaactgggttaggtcctcatctaattctttgccgcttgctcctgtcttccccatatgcagtagcctgtactacaacgaaaagaacaccatcatgtttgatgatctaagaaggaatttcgtcatgaatccacag
          || ||| |||| ||||| || || ||| ||     |||  |         | | ||| | ||||||||||||||| | || |||||| ||||||||||||| || |  |  || |  | |  |           | ||||| | |   | |||   | ||   ||      | || ||   ||  | |  || | |     |||                                                                           
CGCACTTCTTGACCACATGGCAATGATCACGGTTCAGACTTCTTCTCGTGG---------GGTCTTTGATTGCAAGCCTCTTGGTTTGATCTGGGCTAAGTTCCCTGAGgtataattatgaatattatgcaataaactaacatgccatttattttcttaatgga--aagttaacaggagtatgttagcatatttgttcaatcatacat---tgc---------------------------------------------------------------------------