1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTCGCCGCCACCACCCGCAACTTCCGGCGGGCATCGAAGCTGCTCGGCCTCGACTCCAAGCTCGAGCAGAGCCTGCTCATCCCGTTCCGGGAGATCAAGgtgggggtccccccggcgccgtgttgcttgtggcgtctctctattaatcgttcgtgctggtcgaattgtttgctcatgggtttccccacag
species | Zea mays |
transcript | GRMZM2G427097_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGACTCCAAGCTCGAGCAGAGCCTGCTCATCCCGTTCCGGGAGATCAAG GTGGAATGCACCATCCCCAAAGACGACGGCAGCTTGGCGACGTTCGTGGGGEST: gi|18661831|gb|BM501601.1|BM501601
genomic: TCGACTCCAAGCTCGAGCAGAGCCTGCTCATCCCGTTCCGGGAGATCAAGgtgggggtcc ... ttccccacagGTGGAATGCACCATCCCCAAAGACGACGGCAGCTTGGCGACGTTCGTGGGG
EST: TCGACTCCAAGCTCGAGCAGAGCCTGCTCATCCCGTTCCGGGAGATCAAG GTGGAATGCACCATCCCCAAAGACGACGGCAGCTTGGCGACGTTCGTGGGGEST: gi|71772013|gb|DR969950.1|DR969950
genomic: TCGACTCCAAGCTCGAGCAGAGCCTGCTCATCCCGTTCCGGGAGATCAAGgtgggggtcc ... ttccccacagGTGGAATGCACCATCCCCAAAGACGACGGCAGCTTGGCGACGTTCGTGGGG
EST: TCGACTCCAAGCTCGAGCAGAGCCTGCTCATCCCGTTCCGGGAGATCAAG GTGGAATGCACCATCCCCAAAGACGACGGCAGCTTGGCGACGTTCGTGGGG
genomic: TCGACTCCAAGCTCGAGCAGAGCCTGCTCATCCCGTTCCGGGAGATCAAGgtgggggtcc ... ttccccacagGTGGAATGCACCATCCCCAAAGACGACGGCAGCTTGGCGACGTTCGTGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGCCGCCACCACCCGCAACTTCCGGCGGGCATCGAAGCTGCTCGGCCTCGACTCCAAGCTCGAGCAGAGCCTGCTCATCCCGTTCCGGGAGATCAAGgtgggggtccccccggcgccgtgttgcttgtggcgtctctctattaatcgttcgtgctggtcgaattgtttgctcatgggtttccccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA