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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTCGTTGGATCCAATCTTTTATCCAAGCTCAGCGATGGCTTCTCGTCAGCAGCATCCTACTAGCTACCACGCCGGCGAGACCAAGGCCCGTGCCGAGgtgatgagatgagacgcgcgcgcaccgcgcttccagccgccgtgcccgcgcgttgctcgctccgtcgtccttttgcagttacctactccacacgatagagtggacactaacgttggctgctgcatcgcag

Basic information

species Zea mays
transcript GRMZM2G425629_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G425629_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g50910.2 (Oryza sativa), 5'ss of exon 1
--AGTTTCGTTG--GATCCAATCTTTTATCCAAGCTCAGCGATGGCTTCTCGTCAGCAGCATCCTACTAGCTACCACGCCGGCGAGACCAAGGCCCGTGCCGAGgtgatgagatgagacgcgcgcgcaccgcgcttccagccgccgtgcccgcgcgttgctcgctccgtcgtccttttgcagttacctactccacacgatagagtggacactaacgttggctgctgcatcgcag
  ||||    ||  | |      ||  | ||||| |  |||||||||||||   ||||| | |   ||||||||||||||||||||||||||||||| |||||||||| |        || ||   | | ||||   || |   ||| | | | |   | | |  || ||  | ||  ||     | |||            | | |    |  | |||  |  ||| | ||||
TCAGTTCGTGTGTTGGTGAGTGATTCCAGCCAAGTTT-GCGATGGCTTCTC---AGCAGGAACGGGCTAGCTACCACGCCGGCGAGACCAAGGCCCGCGCCGAGgtgaggtttcccttcgtgcatccgc-gcgcgcgcaccgcacgtacac-caccacgtttgtcccatc--cgttgcgcgtgcgcttac------------atttgttgtttgc-ttgtttcgtgcgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211177048|gb|FK988472.1|FK988472
EST:     AGCAGCATCCTACTAGCTACCACGCCGGCGAGACCAAGGCCCGTGCCGAG                         GAGAAGACGGGTCAAGTGATGGGGGCGACGCAGGAGAAAGGGAGGGAGGCC
genomic: AGCAGCATCCTACTAGCTACCACGCCGGCGAGACCAAGGCCCGTGCCGAGgtgatgagat ... tgcatcgcagGAGAAGACGGGTCAAGTGATGGGGGCGACGCAGGAGAAAGGGAGGGAGGCC
EST: gi|211177052|gb|FK988476.1|FK988476
EST:     AGCAGCATCCTACTAGCTACCACGCCGGCGAGACCAAGGCCCGTGCCGAG                         GAGAAGACGGGTCAAGTGATGGGGGCGACGCAGGAGAAAGGGAGGGAGGCC
genomic: AGCAGCATCCTACTAGCTACCACGCCGGCGAGACCAAGGCCCGTGCCGAGgtgatgagat ... tgcatcgcagGAGAAGACGGGTCAAGTGATGGGGGCGACGCAGGAGAAAGGGAGGGAGGCC
EST: gi|211175374|gb|FK988464.1|FK988464
EST:     AGCAGCATCCTACTAGCTACCACGCCGGCGAGACCAAGGCCCGTGCCGAG                         GAGAAGACGGGTCAAGTGATGGGGGCGACGCAGGAGAAAGGGAGGGAGGCC
genomic: AGCAGCATCCTACTAGCTACCACGCCGGCGAGACCAAGGCCCGTGCCGAGgtgatgagat ... tgcatcgcagGAGAAGACGGGTCAAGTGATGGGGGCGACGCAGGAGAAAGGGAGGGAGGCC
EST: gi|211177050|gb|FK988474.1|FK988474
EST:     AGCAGCATCCTACTAGCTACCACGCCGGCGAGACCAAGGCCCGTGCCGAG                         GAGAAGACGGGTCAAGTGATGGGGGCGACGCAGGAGAAAGGGAGGGAGGCC
genomic: AGCAGCATCCTACTAGCTACCACGCCGGCGAGACCAAGGCCCGTGCCGAGgtgatgagat ... tgcatcgcagGAGAAGACGGGTCAAGTGATGGGGGCGACGCAGGAGAAAGGGAGGGAGGCC