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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCGCGCTGGCTGAAGGCTCCTGCAGTGCGCGTTGAAGGCTTTCGCTGCGTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggcgagcatctgccgtgttgtatcgtgtcgtacgttgtcgtgacggcgttattcttgactcactgaccagtgagctcgttctgacgatgtgttaacgatgaatccgtgcag

Basic information

species Zea mays
transcript GRMZM2G422938_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149104327|gb|EE289772.2|EE289772
EST:     GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATG                         ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
genomic: GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggc ... atccgtgcagATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
EST: gi|149089899|gb|EE179185.2|EE179185
EST:     GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATG                         ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
genomic: GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggc ... atccgtgcagATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
EST: gi|148947022|gb|EC892319.2|EC892319
EST:     GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATG                         ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
genomic: GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggc ... atccgtgcagATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
EST: gi|211338713|gb|FL158147.1|FL158147
EST:     GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATG                         ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
genomic: GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggc ... atccgtgcagATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
EST: gi|47962573|gb|CN845282.1|CN845282
EST:     GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATG                         ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
genomic: GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggc ... atccgtgcagATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
EST: gi|71312805|gb|DR792934.1|DR792934
EST:     GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATG                         ATTTCGGGTGATAAATCC
genomic: GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggc ... atccgtgcagATTTCGGGTGATAAATCC
EST: gi|93014248|gb|EB639768.1|EB639768
EST:     GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATG                         ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
genomic: GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggc ... atccgtgcagATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
EST: gi|89761789|gb|DY689662.1|DY689662
EST:     GCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATG                         ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
genomic: GCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggc ... atccgtgcagATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
EST: gi|91051790|gb|EB162208.1|EB162208
EST:     GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATG                         ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
genomic: GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggc ... atccgtgcagATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
EST: gi|211372983|gb|FL340766.1|FL340766
EST:     GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATG                         ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
genomic: GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggc ... atccgtgcagATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
EST: gi|31612368|gb|CD568990.1|CD568990
EST:     GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATG                         ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
genomic: GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggc ... atccgtgcagATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
EST: gi|50331881|gb|CO527007.1|CO527007
EST:     GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATG                         ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
genomic: GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggc ... atccgtgcagATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
EST: gi|18166002|gb|BM335841.1|BM335841
EST:     GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATG                         ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG
genomic: GTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggc ... atccgtgcagATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCGCGCTGGCTGAAGGCTCCTGCAGTGCGCGTTGAAGGCTTTCGCTGCGTGTTGTGCGTTCTGCTTGAATTTCGGTCTGAGTTTGGATGGGCCAGATGgtgagttggcgagcatctgccgtgttgtatcgtgtcgtacgttgtcgtgacggcgttattcttgactcactgaccagtgagctcgttctgacgatgtgttaacgatgaatccgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG