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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGTTAGGATACGACGAGCACGTGAGTCAAATCAagaagctgttcttcttgcactctgtttgaagactttcaagcgaagtgttatcatttttaggtttgtgttctttataacttggcaactttttgatctgaag...

Basic information

species Zea mays
transcript GRMZM2G420865_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G420865_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g29660.1 (Oryza sativa), 5'ss of exon 8
GGTTGTTAGGATACGACGAGCACGTGAGTCAAATCAagaagctgttcttcttgcactctgtttgaagactttcaagcgaagtgttatcatttttaggtttgtgttctttataacttg---gcaactttttgatctgaag---------------------------------------------------------
||| ||||| |||||| ||||||| ||  ||||||||||||||||||| ||||| |||||||||||||||||||||   |  || |||||||| ||||| |||||||  |  || ||   | || || | | | |   |                                                         
GGTGGTTAGAATACGAAGAGCACGCGAAGCAAATCAAGAAGCTGTTCTGCTTGCTCTCTGTTTGAAGACTTTCAAGGATAAAGTAATCATTTTCAGgttagtgttctggaggacctgattgtaatttatggctttattgcttttgtcaatgactcagtgtaacagttcctcagttttgggcattataagatgtata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931983|gb|CF036795.1|CF036795
EST:     ACGTGAGTCAAGTTATCATTTTTAG                         TGGGACAAAGCAATCTGCACACAGGTTAAAAATAATATTTGGTCTCTCTG
genomic: ACGTGAGTCAA---ATC------A-agaagctgtt ... tattatgcagTGGGACAAAGCAATCTGCACACAGGTTAAAAATAATATTTGGTCTCTCTG
EST: gi|32931983|gb|CF036795.1|CF036795
EST:     ACGTGAGTCAAGTTATCATTTTTAG                         TGGGACAAAGCAATCTGCACACAGGTTAAAAATAATATTTGGTCTCTCTG
genomic: ACGTGAGTCAA---ATC------A-agaagctgtt ... tattatgcagTGGGACAAAGCAATCTGCACACAGGTTAAAAATAATATTTGGTCTCTCTG