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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCCGCCAACATGGTGGGCGAAGGCGGGTACGGCGTCGTGTTCAGGGGCGTGCTCCGCGACGGCACCGCCGTCGCCATCAAAAACCTCCACAACAACAGgttggcttcttccctccgcttcaggatttgttcggttggatccgaactccgaagcgtgagcagaaactacacgcaaagcttttctagtctggtcgcgatc...

Basic information

species Zea mays
transcript GRMZM2G418289_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G453438_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g38920.1 (Oryza sativa), 5'ss of exon 1
CCGCCGCCAACATGGTGGGCGAAGGCGGGTACGGCGTCGTGTTCAGGGGCGTGCTCCGCGACGGCACCGCCGTCGCCATCAAAAACCTCCACAACAACAGgttggcttcttccctccgcttcaggatttgttcggttgga--tccgaactccgaagcgtgagcagaaactacacgcaaagcttttctagtctggtcgcgatc--
||||||  ||| || | ||||| ||||| |||||||| || | || |||| | |||||||||  ||||||||||||||| || || |||||||||||||||||         |     |||| |  ||||  || ||  |  | | ||         | |     ||||   | |||||   ||||   || |    || ||  
CCGCCGAGAACGTGCTCGGCGAGGGCGGCTACGGCGTGGTCTACAAGGGCATCCTCCGCGACAACACCGCCGTCGCCATTAAGAATCTCCACAACAACAGgttaaaactcgactagtacttctg--tttggccgattcaaatttcaaaaatgtcgatgggtttgaaaacgcgaagcaaaatatttc--atccgagatcgttccg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71439854|gb|DR820904.1|DR820904
EST:     GTGCTCCGCGACGGCACCGCCGTCGCCATCAAAAACCTCCACAACAACAG                         GGGTCAGGCCGAGAAAGATTTTCGAATGGAGGTTCAGACAATCGGGCGCGT
genomic: GTGCTCCGCGACGGCACCGCCGTCGCCATCAAAAACCTCCACAACAACAGgttggcttct ... acttgatcagGGGTCAGGCCGAGAAAGATTTTCGAATGGAGGTTCAGACAATCGGGCGCGT