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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAGATCCGGCGCCGCCTCCGCCCTCACTTACACTAGCACGCACGGCGGACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagcctcccacagtcccactcccgattaatttacttaaccgccgctattaatacaccgtcccgcccgcccgcccgccccctcctcggctcctcc...

Basic information

species Zea mays
transcript GRMZM2G412899_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32802533|gb|CD954769.1|CD954769
EST:     GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAA                         CGGCGATGCGGTGGAAGCTTA
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTA
EST: gi|32802215|gb|CD954451.1|CD954451
EST:     GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG                         CGGCGATGCGGTGGAAGCTTA
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTA
EST: gi|211187601|gb|FL070471.1|FL070471
EST:     GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG                         CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA