Sequence
atgc intronic sequence ATGC exonic sequenceTCTGTGGAATCAGCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAgttcgtgccgcatgtttcccccggttcctcttaccaccggttaatttatggtgagatttgaatctcatttcattttcccatttccatgtctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G412899_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g17500.2 (Oryza sativa), 5'ss of exon 1
TCTGTGGAATCAGCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAgttcgtgccgcatgtttcccccggttcctcttaccaccggttaattt----atggtgagatttgaa----tctcatttcattttcccatttccatgtctgcag
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TTTCTCCGATCAGCGCCGATGCGGTGGAAGCTTAAGTCGTCGGCGTACAAGCGCGTGCCGTCCAGGGACGCCGCCATGGATCTCGACGTCGAGACGCCAGgtccgtgcacggttttttctct--ttttttttccctgcgatttttttttgggtggtgagattttgaggttttttttttctgtgctcggtggcggtttctgcag
upper sequence: GRMZM2G412899_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g17500.1 (Oryza sativa), 5'ss of exon 2
TCTGTGGAATCAGCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAgttcgtgccgcatgtttcccccggttcctcttaccaccggttaattt----atggtgagatttgaa----tctcatttcattttcccatttccatgtctgcag
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-------------CGCCGATGCGGTGGAAGCTTAAGTCGTCGGCGTACAAGCGCGTGCCGTCCAGGGACGCCGCCATGGATCTCGACGTCGAGACGCCAGgtccgtgcacggttttttctct--ttttttttccctgcgatttttttttgggtggtgagattttgaggttttttttttctgtgctcggtggcggtttctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211038432|gb|FL219794.1|FL219794EST: GCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAA TGAGAATGACGGACGGCGGCGGCAGCGGCGCGGGGCCGTCGTGGCGCATGT
genomic: GCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAgttcgtgccg ... atgtctgcagTGAGAATGACGGACGGCGGCGGCAGCGGCGCGGGGCCGTCGTGGCGCATGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTGTGGAATCAGCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAgttcgtgccgcatgtttcccccggttcctcttaccaccggttaatttatggtgagatttgaatctcatttcattttcccatttccatgtctgcag
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