1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGTACACACCCAATTCCTCGCAACTGGGCTCCCCCGCCTCCACGACACTGCCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCGgtgagtagcccccctccgcatctctctctctctcgccgatcggatatccgcactcgcactcgcacggcgccgctcgcctgcttgctgcgcggccgcgcct...
species | Zea mays |
transcript | GRMZM2G410515_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCG TAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAAEST: gi|211005246|gb|FL018196.1|FL018196
genomic: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCGgtgagtagcc ... gaatttgcagTAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAA
EST: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCG TAGTCTGCCTGTACCTATTGGCTGAAGAAGAGCTGACCCCCACTTTATCAAEST: gi|211002473|gb|FL018192.1|FL018192
genomic: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCGgtgagtagcc ... gaatttgcagTAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAA
EST: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCG TAGTCTGCCTGTACCTATTGGCTGAAGAAGAGCTGACCCCCACTTTATCAAEST: gi|211417844|gb|FL018174.1|FL018174
genomic: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCGgtgagtagcc ... gaatttgcagTAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAA
EST: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCG TAGTCTGCCTGTACCTATTGGCTGAAGAAGAGCTGACCCCCACTTTATCAAEST: gi|211417848|gb|FL018178.1|FL018178
genomic: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCGgtgagtagcc ... gaatttgcagTAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAA
EST: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCG TAGTCTGCCTGTACCTATTGGCTGAAGAAGAGCTGACCCCCACTTTATCAAEST: gi|211417840|gb|FL018170.1|FL018170
genomic: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCGgtgagtagcc ... gaatttgcagTAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAA
EST: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCG TAGTCTGCCTGTACCTATTGGCTGAAGAAGAGCTGACCCCCACTTTATCAAEST: gi|89248325|gb|DY620111.1|DY620111
genomic: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCGgtgagtagcc ... gaatttgcagTAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAA
EST: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCG TAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAAEST: gi|211002465|gb|FL018184.1|FL018184
genomic: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCGgtgagtagcc ... gaatttgcagTAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAA
EST: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCG TAGTCTGCCTGTACCTATTGGCTGAAA-AGAGCTGACCCCCACTTTATCAAEST: gi|211417841|gb|FL018171.1|FL018171
genomic: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCGgtgagtagcc ... gaatttgcagTAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAA
EST: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCG TAGTCTGCCTGTACCTATTGGCTGAAGAAGAGCTGACCCCCACTTTATCAAEST: gi|74236167|gb|DT644081.1|DT644081
genomic: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCGgtgagtagcc ... gaatttgcagTAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAA
EST: CTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCG TAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAAEST: gi|211002466|gb|FL018185.1|FL018185
genomic: CTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCGgtgagtagcc ... gaatttgcagTAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAA
EST: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCG TAGTCTGCCTGTACCTATTGGCTGAAGAAGAGCTGACCCCCACTTTATCAA
genomic: CCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCGgtgagtagcc ... gaatttgcagTAGTCTGCCTGTACCTATTGGCTGAAGCAGAGCTGACCCCCACTTTATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTACACACCCAATTCCTCGCAACTGGGCTCCCCCGCCTCCACGACACTGCCCCCCGCCTCAAGTCCGCCGCCTCCATTCTTCAGCTCTCCTATCCTCCGgtgagtagcccccctccgcatctctctctctctcgccgatcggatatccgcactcgcactcgcacggcgccgctcgcctgcttgctgcgcggccgcgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcgcc