1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCAGCCCACGGCACCCCCGATCCCAATAAGCACCGAACCCTATAGCCCAAAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagcttgctacattccctcctgcgccgccgtcccccgcaacgttctgtgggtggatggggcgctcgtttcttctggatgacaagccgatgcacg...
species | Zea mays |
transcript | GRMZM2G409407_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211266085|gb|FL031064.1|FL031064
genomic: ACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: GTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211263644|gb|FL031048.1|FL031048
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: GTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211247721|gb|FL179851.1|FL179851
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: AAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211266082|gb|FL031061.1|FL031061
genomic: AAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: GTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211266086|gb|FL031065.1|FL031065
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: GTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211263648|gb|FL031052.1|FL031052
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: TCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211247720|gb|FL179850.1|FL179850
genomic: TCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: CCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211456254|gb|FL273553.1|FL273553
genomic: CCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: AAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211266087|gb|FL031066.1|FL031066
genomic: AAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: CCGCCGCCGCCGCGTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|33091972|gb|CF051966.1|CF051966
genomic: CCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: GCCGCGTCTTCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211263643|gb|FL031047.1|FL031047
genomic: GCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: GTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211263650|gb|FL031054.1|FL031054
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: GTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|76281416|gb|DV020984.1|DV020984
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: AAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|78085923|gb|DV514316.1|DV514316
genomic: AAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: CCGCCGCCGCCGCGTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|6973668|gb|AW438242.1|AW438242
genomic: CCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: GCCGCCGCCGCGT-TCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211266077|gb|FL031056.1|FL031056
genomic: GCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: CGCGTCTCCTCTGCAG GTAAGAAGGTAAGGWAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211266083|gb|FL031062.1|FL031062
genomic: CGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: CTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|78180971|gb|DV551344.1|DV551344
genomic: CTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: GCCGCCGCCGCGTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211266080|gb|FL031059.1|FL031059
genomic: GCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: ACTTCACGCCCCTCCGCCGCCG-CGCGTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211263641|gb|FL031045.1|FL031045
genomic: ACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: GTCTCCTCTGCAG GTAAGAAGGTNAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211263645|gb|FL031049.1|FL031049
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: GTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211266081|gb|FL031060.1|FL031060
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: GTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCEST: gi|211266084|gb|FL031063.1|FL031063
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: GTCTCCTCTGCAG GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGCCCACGGCACCCCCGATCCCAATAAGCACCGAACCCTATAGCCCAAAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagcttgctacattccctcctgcgccgccgtcccccgcaacgttctgtgggtggatggggcgctcgtttcttctggatgacaagccgatgcacg
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