Sequence
atgc intronic sequence ATGC exonic sequenceGCTGCGGCCATGAACGCCTTCCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTGCTCCTCCTCAAGATCTACGCCACCAAGTCCTGCTCAGgtaactcctagcagcgatagggtttcgaacgcccgttaggggggcttgccgcttacggatctgggcgcctccgcgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G408989_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g45310.1 (Oryza sativa), 5'ss of exon 1
GCTGCGGCCATGAACGCCTTCCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTGCTCCTCCTCAAGATCTACGCCACCAAGTCCTGCTCAGgtaactcctagc--------agcgatagggtttcgaacgcccgtt--------aggggggcttgccgcttacggatctgggcgcctccgcgcag
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GCTTCAGCCATGAACGCCTTTCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTCCTCCTGCTCAAGATCTACGCCACGAAATCCTGCTCAGgtgagcccgagccgtacagtgggggtagggtttcggccgcttggttgggggtgggggggattctccgctcacggatctgtgtg--ttggcgcag
upper sequence: GRMZM2G408989_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G12570.1 (Glycine max), 5'ss of exon 1
GCTGCGGCCATGAACGCCTTCCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTGCTCCTCCTCAAGATCTACGCCACCAAGTCCTGCTCAGgtaactc-ctagcag---cgatagggtttcgaacgcccgttaggggggcttgccgcttacggatct-gggcgcctccgcgcag--------------------------------------------------------------------------------
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GCAAAAACCATGAACATCTTCAGGCTCGCCGGTGACATGACCCATCTTTTCAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGTTCAGgtctctctctcgcggttcccccaaaattggggctattttttattctatttttcaaatgttcattctcgagtgtcactccgtcactcacattcctccgccaaacaaaatttcctatgtttgatttccatcattttaccgattgtttggaactgttatttttcag
upper sequence: GRMZM2G408989_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA05G29410.1 (Glycine max), 5'ss of exon 1
GCTGCGGCCATGAACGCCTTCCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTGCTCCTCCTCAAGATCTACGCCACCAAGTCCTGCTCAGgtaactcctagcagcgatagggtttcgaacgcccgttaggggggcttgccgcttacggatctgggcgcctccgcgcag----------------------
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GCAAAAACCATGAACATCTTCAGGCTCGCCGGTGATATGACCCATCTTCTCAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGCTCAGgtctcttcactcttcattctctctctctctctctctctctctctctctctctctctctctctttctcttttctcgcggttcccccaaaattggggctattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211285777|gb|FL373355.1|FL373355EST: CTCGGTCCTCGTGCTCCTCCTCAAGATCTACGCCACCAAGTCCTGCTCAG GGGTGTCGAGGAAGACGCAGGAGCTGTACATGTTGGTGTTCGTGGCGAG
genomic: CTCGGTCCTCGTGCTCCTCCTCAAGATCTACGCCACCAAGTCCTGCTCAGgtaactccta ... ctccgcgcagGGGTGTCGAGGAAGACGCAGGAGCTGTACATGTTGGTGTTCGTGGCGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGCGGCCATGAACGCCTTCCGGTTCCTCGGGGACATGACCCACCTCTTCTCGGTCCTCGTGCTCCTCCTCAAGATCTACGCCACCAAGTCCTGCTCAGgtaactcctagcagcgatagggtttcgaacgcccgttaggggggcttgccgcttacggatctgggcgcctccgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC