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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGATTCCTCCTCCACCGATTCGCCCGGCGGGAGTCTCCGCAGGGCTCACCGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcccccggcctcgtcgcccccctcctccccgttcgcgcctctcgatttggtggctccgcggaccgcggtaagctcagcggctgattagggcggtgtcgcccctggctgctgttgctgggatgtgcag

Basic information

species Zea mays
transcript GRMZM2G408242_T05
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G408242_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g32680.4 (Oryza sativa), 5'ss of exon 1
GCGATTCCTCCT-----CCACCGATTCGCCCGGCGGGAGTCTCCGCAGGGCTCACCGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcccccggcctcgtcgcccccctcctccccgttcgcgcctctcgatttggtggctccgcggaccgcggtaagctcagcggctgattagggcggtgtcgcccctggctgctgttgctgggatgtgcag
||  ||||   |     || |||||||| |||| | |  || ||| ||   || ||    ||  |   ||||||||||||||||||||||||||||||||||||||||||| |||  |  || |  ||   ||| ||  | || |   |  ||| |   ||  |  |||| |  | |     ||||  || ||||||| ||| |||||                               
GCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAG---TCGCCTCCGCCCTG--CCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtccaacctcccccacgtttccccccctctcgattcggtttcttgggctg-cgaatccgtgagctg-----agct--gctgctgatttggggggtgttcgtt--------------------------

upper sequence: GRMZM2G408242_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g32680.1 (Oryza sativa), 5'ss of exon 1
GCGATTCCT-----CCTCCACCGATTCGCCCGGCGGGAGTCTCCGCAGGGCTCACCGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcccccggcctcgtcgcccccctcctccccgttcgcgcctctcgatttggtggctccgcggaccgcggtaagctcagcggctgattagggcggtgt-cgcccctggctg---ctgttgctgggatgtgcag
||  ||||       | || |||||||| |||| | |  || ||| ||   || ||    ||  |   ||||||||||||||||||||||||||||||||||||||||||| |||  |  || |  ||   ||| ||  | || |   |  ||| |   ||  |  |||| |  | |     ||||  || ||||||| ||| ||||| ||  | ||  ||   | |  ||  |   | ||||
GCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAG---TCGCCTCCGCCCTG--CCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtccaacctcccccacgtttccccccctctcgattcggtttcttgggctg-cgaatccgtgagctg-----agct--gctgctgatttggggggtgttcgttcgtgtgtgatcccgcggcgagcgagggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211005775|gb|FL390293.1|FL390293
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|93282134|gb|EB674398.1|EB674398
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|31612261|gb|CD568883.1|CD568883
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG