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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGATTCCTCCTCCACCGATTCGCCCGGCGGGAGTCTCCGCAGGGCTCACCGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcccccggcctcgtcgcccccctcctccccgttcgcgcctctcgatttggtggctccgcggaccgcggtaagctcagcggctgattagggcggtgtcgcccctggctgctgttgctgggatgtgcag

Basic information

species Zea mays
transcript GRMZM2G408242_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G408242_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g32680.4 (Oryza sativa), 5'ss of exon 1
GCGATTCCTCCT-----CCACCGATTCGCCCGGCGGGAGTCTCCGCAGGGCTCACCGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcccccggcctcgtcgcccccctcctccccgttcgcgcctctcgatttggtggctccgcggaccgcggtaagctcagcggctgattagggcggtgtcgcccctggctgctgttgctgggatgtgcag
||  ||||   |     || |||||||| |||| | |  || ||| ||   || ||    ||  |   ||||||||||||||||||||||||||||||||||||||||||| |||  |  || |  ||   ||| ||  | || |   |  ||| |   ||  |  |||| |  | |     ||||  || ||||||| ||| |||||                               
GCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAG---TCGCCTCCGCCCTG--CCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtccaacctcccccacgtttccccccctctcgattcggtttcttgggctg-cgaatccgtgagctg-----agct--gctgctgatttggggggtgttcgtt--------------------------

upper sequence: GRMZM2G408242_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g32680.1 (Oryza sativa), 5'ss of exon 1
GCGATTCCT-----CCTCCACCGATTCGCCCGGCGGGAGTCTCCGCAGGGCTCACCGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcccccggcctcgtcgcccccctcctccccgttcgcgcctctcgatttggtggctccgcggaccgcggtaagctcagcggctgattagggcggtgt-cgcccctggctg---ctgttgctgggatgtgcag
||  ||||       | || |||||||| |||| | |  || ||| ||   || ||    ||  |   ||||||||||||||||||||||||||||||||||||||||||| |||  |  || |  ||   ||| ||  | || |   |  ||| |   ||  |  |||| |  | |     ||||  || ||||||| ||| ||||| ||  | ||  ||   | |  ||  |   | ||||
GCTCTTCCCGGTGAGCGCCGCCGATTCGGCCGGAGAGGCTCGCCGGAG---TCGCCTCCGCCCTG--CCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcgtccaacctcccccacgtttccccccctctcgattcggtttcttgggctg-cgaatccgtgagctg-----agct--gctgctgatttggggggtgttcgttcgtgtgtgatcccgcggcgagcgagggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211116523|gb|FL229712.1|FL229712
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211116525|gb|FL229714.1|FL229714
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|88748070|gb|DY532211.1|DY532211
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCATCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115736|gb|FL229707.1|FL229707
EST:     CGGGACCGCGGGT-CACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115731|gb|FL229702.1|FL229702
EST:     CGGGACCGCGGGT-CACNATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGC-GSGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211117332|gb|FL229741.1|FL229741
EST:     CGGGACCGCGGGTCAACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCT-GACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115739|gb|FL229710.1|FL229710
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211116530|gb|FL229719.1|FL229719
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115740|gb|FL229711.1|FL229711
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211116529|gb|FL229718.1|FL229718
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211117322|gb|FL229731.1|FL229731
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211116535|gb|FL229724.1|FL229724
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211116537|gb|FL229726.1|FL229726
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211117328|gb|FL229737.1|FL229737
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211116524|gb|FL229713.1|FL229713
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCCTGGTGCCGGCGGCGGAAC
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACC-TGGTGCCGGCGGCGGACC
EST: gi|211117330|gb|FL229739.1|FL229739
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGAACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211116528|gb|FL229717.1|FL229717
EST:     CGGGACCGCGGGT-CACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCT-GACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|18650040|gb|BM498859.1|BM498859
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211116534|gb|FL229723.1|FL229723
EST:     CGGGACCGCGGGT-CACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|22818772|gb|BU498862.1|BU498862
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|17970138|gb|BM276903.1|BM276903
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|5325108|gb|AI783299.1|AI783299
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|19822800|gb|BQ048824.1|BQ048824
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211116533|gb|FL229722.1|FL229722
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115728|gb|FL229699.1|FL229699
EST:     CGGGACCGCGGGT-CACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211117326|gb|FL229735.1|FL229735
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211114947|gb|FL229695.1|FL229695
EST:     CGGGACCGCGGGT-CACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCTGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211116532|gb|FL229721.1|FL229721
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115733|gb|FL229704.1|FL229704
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211116531|gb|FL229720.1|FL229720
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211117318|gb|FL229727.1|FL229727
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|74235410|gb|DT643324.1|DT643324
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115727|gb|FL229698.1|FL229698
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|50333682|gb|CO528808.1|CO528808
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211117324|gb|FL229733.1|FL229733
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211117325|gb|FL229734.1|FL229734
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|6020447|gb|AW065375.1|AW065375
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211117323|gb|FL229732.1|FL229732
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|149084617|gb|EE174095.2|EE174095
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211117321|gb|FL229730.1|FL229730
EST:     CGGGACCGCGGGT-CACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGC-GSGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115734|gb|FL229705.1|FL229705
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115735|gb|FL229706.1|FL229706
EST:     CGGGACCGCGGGT-CACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCT-GACCCCGAGGACGTGGACCTGGTGCCGGC-GSGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|148990759|gb|EE032170.2|EE032170
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|93015766|gb|EB641286.1|EB641286
EST:     CGGGACCGCGGGTCCACGATGGCGGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115729|gb|FL229700.1|FL229700
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211114948|gb|FL229696.1|FL229696
EST:     CGGGACCGCGGGT-CACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGC-GSGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|26456727|gb|CA828310.1|CA828310
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|20803321|gb|BQ294371.1|BQ294371
EST:     GGGACCGCGGGTCCACGATGGCCGCTCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: GGGACCGCGGGTCCACGATGGCCGC-CAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115737|gb|FL229708.1|FL229708
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|22521612|gb|BU080423.1|BU080423
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115732|gb|FL229703.1|FL229703
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115730|gb|FL229701.1|FL229701
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211117331|gb|FL229740.1|FL229740
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211114945|gb|FL229693.1|FL229693
EST:     CGGGACCGCGGGT-CACGATRGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCACGGCGGCGGACC
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGC-CGGCGGCGGACC
EST: gi|211117319|gb|FL229728.1|FL229728
EST:     CGGGACCGCGGGT-CACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCT-GACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211116526|gb|FL229715.1|FL229715
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211115726|gb|FL229697.1|FL229697
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211117329|gb|FL229738.1|FL229738
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|148937775|gb|EC881986.2|EC881986
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
EST: gi|211116527|gb|FL229716.1|FL229716
EST:     CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTG                         CAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG
genomic: CGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 116

GCGATTCCTCCTCCACCGATTCGCCCGGCGGGAGTCTCCGCAGGGCTCACCGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCGGGAGCGAGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 93

GCGATTCCTCCTCCACCGATTCGCCCGGCGGGAGTCTCCGCAGGGCTCACCGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCGGGAGCGAGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 123

GCGATTCCTCCTCCACCGATTCGCCCGGCGGGAGTCTCCGCAGGGCTCACCGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCGGGAGCGAGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATG


Block sizes: 48 (upstream exon), 46 (downstream exon)
Score: 141

GCGATTCCTCCTCCACCGATTCGCCCGGCGGGAGTCTCCGCAGGGCTCACCGGGACCGCGGGTCCACGATGGCCGCCAACTTCTGGACGTCGTCGCACTGgtaagcctcc ... ggatgtgcagCAAGCAGCTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCGGGAGCGAGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATG