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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTCGTGGCGGCGGCGGCTGCCGCTGGCGCCGGCGGCGAGGCATCTTCGGCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAAgtaagcaccccaccttgcccgccgaaatgcggcctccttgtttcttaatctctcgcggcgcgcgggatttctccgttcctttttcttcttctgatgacgctgctcgggttttctggcgtcaaatgcag

Basic information

species Zea mays
transcript GRMZM2G407044_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211258838|gb|FL034314.1|FL034314
EST:     GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAA                         GGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
genomic: GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAAgtaagcaccc ... tcaaatgcagGGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
EST: gi|211261271|gb|FL034325.1|FL034325
EST:     CCCCCGTGGCTGTGGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAA                         GGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
genomic: CCCCCGTGGCTGTG-TCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAAgtaagcaccc ... tcaaatgcagGGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
EST: gi|148959834|gb|EE153063.2|EE153063
EST:     GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAA                         GGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
genomic: GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAAgtaagcaccc ... tcaaatgcagGGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
EST: gi|211258845|gb|FL034321.1|FL034321
EST:     GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAA                         GGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
genomic: GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAAgtaagcaccc ... tcaaatgcagGGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
EST: gi|149075260|gb|EE163764.2|EE163764
EST:     GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAA                         GGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
genomic: GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAAgtaagcaccc ... tcaaatgcagGGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
EST: gi|211258848|gb|FL034324.1|FL034324
EST:     GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAA                         GGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
genomic: GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAAgtaagcaccc ... tcaaatgcagGGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
EST: gi|76285096|gb|DV024664.1|DV024664
EST:     GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAA                         GGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
genomic: GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAAgtaagcaccc ... tcaaatgcagGGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
EST: gi|149087824|gb|EE177122.2|EE177122
EST:     GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAA                         GGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
genomic: GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAAgtaagcaccc ... tcaaatgcagGGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
EST: gi|211258839|gb|FL034315.1|FL034315
EST:     GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAA                         GGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
genomic: GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAAgtaagcaccc ... tcaaatgcagGGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
EST: gi|211261273|gb|FL034327.1|FL034327
EST:     GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAA                         GGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
genomic: GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAAgtaagcaccc ... tcaaatgcagGGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
EST: gi|211258836|gb|FL034312.1|FL034312
EST:     CCCCCGTGGCTGTGTCGGCTGTCGCNNCCCGCGGGCGCTGCCAGGGACAA                         GGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
genomic: CCCCCGTGGCTGTGTCGGCTGTCGCC-CCCGCGGGCGCTGCCAGGGACAAgtaagcaccc ... tcaaatgcagGGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
EST: gi|211258843|gb|FL034319.1|FL034319
EST:     GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAA                         GGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
genomic: GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAAgtaagcaccc ... tcaaatgcagGGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
EST: gi|148949305|gb|EC894756.2|EC894756
EST:     GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAA                         GGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT
genomic: GCCCCCGTGGCTGTGTCGGCTGTCGCCCCCGCGGGCGCTGCCAGGGACAAgtaagcaccc ... tcaaatgcagGGTGCGGCGCCACACGATTTCGGTGTTCGTCGGGGACGAGAGCGGCATGAT