1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTCCTTGCCCCGGCTGGATCTCGAGTTCAGGAAACCTTGCGCCCCTCTTCCTTCTCGTTTACGCCGCTAGATTTGGGTTGCTGCCGCTTATTTTCTTGGgtgagtttttcttctcttttcatttgggttgtttgctgtatttgacagcgggttggtttgaccgtcgttttgtccctgcacttcctcgcaagctctggcc...
species | Zea mays |
transcript | GRMZM2G406603_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCTAGATTTGGGTTGCTGCCGCTTATTTTCTTGG ATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCGEST: gi|76289683|gb|DV029251.1|DV029251
genomic: CGCTAGATTTGGGTTGCTGCCGCTTATTTTCTTGGgtgagttttt ... gctgaaccagATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCG
EST: CCTTCTCGTTTACGCCGCTAGATTTGGGTTGCTGCCGCTTATTTTCTTGG ATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCGEST: gi|149067415|gb|EE286979.2|EE286979
genomic: CCTTCTCGTTTACGCCGCTAGATTTGGGTTGCTGCCGCTTATTTTCTTGGgtgagttttt ... gctgaaccagATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCG
EST: CCTTCTCGTTTACGCCGCTAGATTTGGGTTGCTGCCGCTTATTTTCTTGG ATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCG
genomic: CCTTCTCGTTTACGCCGCTAGATTTGGGTTGCTGCCGCTTATTTTCTTGGgtgagttttt ... gctgaaccagATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCCTTGCCCCGGCTGGATCTCGAGTTCAGGAAACCTTGCGCCCCTCTTCCTTCTCGTTTACGCCGCTAGATTTGGGTTGCTGCCGCTTATTTTCTTGGgtgagtttttcttctcttttcatttgggttgtttgctgtatttgacagcgggttggtttgaccgtcgttttgtccctgcacttcctcgcaagctctggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctcg