1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGCGGGCATCCAGGCGGACATCAAGGCGTGCGCGGCCCTAGGAGCCTACTGCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAGgcacgttatgcctaatcaaccccccccccccccccccccccccccccgcttttcttcttctactagtctgctttctttcgctacgattcgaccgagaacaggggatgaatgatccggtggtgctgtag
species | Zea mays |
transcript | GRMZM2G401934_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAG GGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTTEST: gi|71435005|gb|DR816055.1|DR816055
genomic: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAGgcacgttatg ... ggtgctgtagGGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTT
EST: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAG GGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTTEST: gi|211420915|gb|FL387494.1|FL387494
genomic: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAGgcacgttatg ... ggtgctgtagGGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTT
EST: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAG GGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTTEST: gi|211382046|gb|FL389252.1|FL389252
genomic: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAGgcacgttatg ... ggtgctgtagGGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTT
EST: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAG GGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTTEST: gi|211171325|gb|FL398223.1|FL398223
genomic: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAGgcacgttatg ... ggtgctgtagGGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTT
EST: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAG GGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTTEST: gi|211112120|gb|FL406941.1|FL406941
genomic: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAGgcacgttatg ... ggtgctgtagGGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTT
EST: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAG GGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTTEST: gi|71430480|gb|DR811530.1|DR811530
genomic: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAGgcacgttatg ... ggtgctgtagGGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTT
EST: GAACACCGTCGGCGTCCAG GGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTTEST: gi|211080316|gb|FL423993.1|FL423993
genomic: GAACACCGTCGGCGTCCAGgcacgttatg ... ggtgctgtagGGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTT
EST: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAG GGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTTEST: gi|211201984|gb|FL401723.1|FL401723
genomic: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAGgcacgttatg ... ggtgctgtagGGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTT
EST: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAG GGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTTEST: gi|211204885|gb|FL411800.1|FL411800
genomic: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAGgcacgttatg ... ggtgctgtagGGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTT
EST: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAG GGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTT
genomic: GCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAGgcacgttatg ... ggtgctgtagGGGATCCATGCTGTGCCGGAGAAGTTCGTGGGAGAGCAGCTCAGGTCGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGGGCATCCAGGCGGACATCAAGGCGTGCGCGGCCCTAGGAGCCTACTGCTCCTCCGTAATCACTGCTGTCACCGCGCAGAACACCGTCGGCGTCCAGgcacgttatgcctaatcaaccccccccccccccccccccccccccccgcttttcttcttctactagtctgctttctttcgctacgattcgaccgagaacaggggatgaatgatccggtggtgctgtag
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